{ "type": "genome", "identifier": "GCF_017979425.1", "organism": "Helicobacter salomonis", "title": "Helicobacter salomonis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "King's College London", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017979425.1", "bioproject": "PRJNA224116", "biosample": "SAMN17297348", "wgs_master": "JAERIS000000000.1", "refseq_category": "na", "taxid": "56878", "species_taxid": "56878", "organism_name": "Helicobacter salomonis", "infraspecific_name": "strain=CIP 105607", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/15", "asm_name": "ASM1797942v1", "asm_submitter": "King's College London", "gbrs_paired_asm": "GCA_017979425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/979/425/GCF_017979425.1_ASM1797942v1", "excluded_from_refseq": "na", 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"sample_host_location": [ "Finland" ], "sample_host_location_id": [], "data_size": "0.415 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1445232", "Number of Sequences": "72", "Longest Sequences (bp)": "104561", "N50 (bp)": "43879", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.9", "Number of CDSs": "1377", "Average Protein Length": "312.8", "Coding Ratio (%)": "89.4", "Number of rRNAs": "1", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Helicobacter salomonis", "strain": "strain=CIP 105607", "accession": "GCA_017979425.1", "taxid": 56878, "species_taxid": 56878, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 452, 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"organism_name": "Helicobacter bizzozeronii", "strain": "strain=CIP 105233", "accession": "GCA_017979515.1", "taxid": 56877, "species_taxid": 56877, "relation_to_type": "type", "validated": true, "ani": 80.0063, "matched_fragments": 169, "total_fragments": 455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter mehlei", "strain": "strain=L15", "accession": "GCA_003660265.1", "taxid": 2316080, "species_taxid": 2316080, "relation_to_type": "type", "validated": true, "ani": 79.3255, "matched_fragments": 168, "total_fragments": 455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter heilmannii", "strain": "strain=LMG 26292", "accession": "GCA_017979395.1", "taxid": 35817, "species_taxid": 35817, "relation_to_type": "type", "validated": true, "ani": 77.2977, "matched_fragments": 106, "total_fragments": 455, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter heilmannii", "strain": "", 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76.999, "matched_fragments": 90, "total_fragments": 455, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.68", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_902196125.1", "gtdb_species": "s__Helicobacter_E suis_B", "ani": 76.9597, "matched_fragments": 84, "total_fragments": 455, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.42", "min_intra_species_ani": "96.42", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.097, "cell_length": 0.698, "doubling_h": 0.5, 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