{ "type": "genome", "identifier": "GCF_017979455.1", "organism": "Helicobacter canis", "title": "Helicobacter canis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "King's College London", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017979455.1", "bioproject": "PRJNA224116", "biosample": "SAMN17297342", "wgs_master": "JAERIX000000000.1", "refseq_category": "na", "taxid": "29419", "species_taxid": "29419", "organism_name": "Helicobacter canis", "infraspecific_name": "strain=CCUG 32756", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/15", "asm_name": "ASM1797945v1", "asm_submitter": "King's College London", "gbrs_paired_asm": "GCA_017979455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/979/455/GCF_017979455.1_ASM1797945v1", "excluded_from_refseq": "na", "relation_to_type_material": 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"Switzerland" ], "sample_host_location_id": [], "data_size": "0.501 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1802906", "Number of Sequences": "58", "Longest Sequences (bp)": "178170", "N50 (bp)": "110129", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.0", "Number of CDSs": "1654", "Average Protein Length": "330.4", "Coding Ratio (%)": "90.9", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Helicobacter canis", "strain": "strain=CCUG 32756", "accession": "GCA_017979455.1", "taxid": 29419, "species_taxid": 29419, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 581, "total_fragments": 585, "ani_threshold": 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"gtdb_species": "s__Helicobacter_B fennelliae", "ani": 77.6076, "matched_fragments": 89, "total_fragments": 585, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.60", "min_intra_species_ani": "99.16", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001854545.1", "gtdb_species": "s__Helicobacter_B sp001854545", "ani": 77.1258, "matched_fragments": 147, "total_fragments": 585, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, 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