{ "type": "genome", "identifier": "GCF_017979475.1", "organism": "Helicobacter pullorum NCTC 12824", "title": "Helicobacter pullorum NCTC 12824", "description": "na", "data type": "Genome sequencing and assembly", "organization": "King's College London", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017979475.1", "bioproject": "PRJNA224116", "biosample": "SAMN17297347", "wgs_master": "JAERIT000000000.1", "refseq_category": "na", "taxid": "552535", "species_taxid": "35818", "organism_name": "Helicobacter pullorum NCTC 12824", "infraspecific_name": "strain=CCUG 33837", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/15", "asm_name": "ASM1797947v1", "asm_submitter": "King's College London", "gbrs_paired_asm": "GCA_017979475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/979/475/GCF_017979475.1_ASM1797947v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1708003", "genome_size_ungapped": "1708003", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017979475.1-RS_2024_05_11", "annotation_date": "2024-05-11", "total_gene_count": "1764", "protein_coding_gene_count": "1700", "non_coding_gene_count": "41", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-15", "dateModified": "2021-04-15", "datePublished": "2021-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Helicobacter pullorum NCTC 12824" ], "sample_taxid": [ "552535" ], "sample_host_organism": [ "Gallus gallus" ], "sample_host_organism_id": [], "sample_host_disease": [ "gastrointestinal" ], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "0.470 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1708003", "Number of Sequences": "26", "Longest Sequences (bp)": "282205", "N50 (bp)": "188339", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.3", "Number of CDSs": "1695", "Average Protein Length": "303.7", "Coding Ratio (%)": "90.4", "Number of rRNAs": "2", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Helicobacter pullorum", "strain": "strain=CCUG 33837", "accession": "GCA_017979475.1", "taxid": 35818, "species_taxid": 35818, "relation_to_type": "type", "validated": true, "ani": 100.0, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter valdiviensis", "strain": "strain=WBE14", "accession": "GCA_003245365.1", "taxid": 1458358, "species_taxid": 1458358, "relation_to_type": "type", "validated": true, "ani": 78.2875, "matched_fragments": 195, "total_fragments": 559, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter burdigaliensis", "strain": "strain=CNRCH 2005/566H", "accession": "GCA_003670295.1", "taxid": 2315334, "species_taxid": 2315334, "relation_to_type": "type", "validated": true, "ani": 78.0902, "matched_fragments": 207, "total_fragments": 559, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Helicobacter turcicus", "strain": "strain=Faydin-H70", "accession": "GCA_019711685.1", "taxid": 2867412, "species_taxid": 2867412, "relation_to_type": "type", "validated": true, "ani": 77.9201, "matched_fragments": 155, "total_fragments": 559, "ani_threshold": 95, "status": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 1.0 }, "_genome_taxon": [ "Helicobacter", "pullorum", "NCTC", "12824" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }