{
    "type": "genome",
    "identifier": "GCF_017979515.1",
    "organism": "Helicobacter bizzozeronii",
    "title": "Helicobacter bizzozeronii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "King's College London",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_017979515.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN17297341",
        "wgs_master": "JAERIY000000000.1",
        "refseq_category": "na",
        "taxid": "56877",
        "species_taxid": "56877",
        "organism_name": "Helicobacter bizzozeronii",
        "infraspecific_name": "strain=CIP 105233",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/15",
        "asm_name": "ASM1797951v1",
        "asm_submitter": "King's College London",
        "gbrs_paired_asm": "GCA_017979515.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/979/515/GCF_017979515.1_ASM1797951v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1759099",
        "genome_size_ungapped": "1759099",
        "gc_percent": "45.500000",
        "replicon_count": "0",
        "scaffold_count": "274",
        "contig_count": "274",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_017979515.1-RS_2024_05_11",
        "annotation_date": "2024-05-11",
        "total_gene_count": "1882",
        "protein_coding_gene_count": "1691",
        "non_coding_gene_count": "47",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-15",
    "dateModified": "2021-04-15",
    "datePublished": "2021-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Helicobacter bizzozeronii"
        ],
        "sample_taxid": [
            "56877"
        ],
        "sample_host_organism": [
            "Canis lupus familiaris"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "gastrointestinal"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Finland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.501 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1759099",
        "Number of Sequences": "274",
        "Longest Sequences (bp)": "46391",
        "N50 (bp)": "18204",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.7",
        "Number of CDSs": "1596",
        "Average Protein Length": "306.8",
        "Coding Ratio (%)": "83.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Helicobacter bizzozeronii",
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                "accession": "GCA_017979515.1",
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                "species_taxid": 56877,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 481,
                "total_fragments": 484,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Helicobacter mehlei",
                "strain": "strain=L15",
                "accession": "GCA_003660265.1",
                "taxid": 2316080,
                "species_taxid": 2316080,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.6965,
                "matched_fragments": 404,
                "total_fragments": 484,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter salomonis",
                "strain": "strain=CIP 105607",
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                "species_taxid": 56878,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9066,
                "matched_fragments": 159,
                "total_fragments": 484,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter vulpis",
                "strain": "strain=L2",
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                "taxid": 2316076,
                "species_taxid": 2316076,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3717,
                "matched_fragments": 208,
                "total_fragments": 484,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter felis",
                "strain": "strain=ATCC 49179",
                "accession": "GCA_000200595.1",
                "taxid": 214,
                "species_taxid": 214,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3223,
                "matched_fragments": 212,
                "total_fragments": 484,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter ailurogastricus",
                "strain": "",
                "accession": "GCA_001282945.1",
                "taxid": 1578720,
                "species_taxid": 1578720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9323,
                "matched_fragments": 219,
                "total_fragments": 484,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter heilmannii",
                "strain": "strain=LMG 26292",
                "accession": "GCA_017979395.1",
                "taxid": 35817,
                "species_taxid": 35817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.514,
                "matched_fragments": 179,
                "total_fragments": 484,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter heilmannii",
                "strain": "",
                "accession": "GCA_001283065.1",
                "taxid": 35817,
                "species_taxid": 35817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4801,
                "matched_fragments": 187,
                "total_fragments": 484,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_000263275.1",
                "gtdb_species": "s__Helicobacter_E bizzozeronii",
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                "matched_fragments": 462,
                "total_fragments": 484,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.96",
                "min_intra_species_ani": "95.19",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 11,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003660265.1",
                "gtdb_species": "s__Helicobacter_E mehlei",
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                "total_fragments": 484,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.56",
                "min_intra_species_ani": "99.56",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_017979425.1",
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                "matched_fragments": 159,
                "total_fragments": 484,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.52",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_900197855.1",
                "gtdb_species": "s__Helicobacter_E cynogastricus",
                "ani": 79.6524,
                "matched_fragments": 189,
                "total_fragments": 484,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003660395.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_000200595.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E",
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            },
            {
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            },
            {
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                "num_clustered_genomes": 4,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "bacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "bizzozeronii"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}