{ "type": "genome", "identifier": "GCF_018069755.1", "organism": "Ideonella aquatica", "title": "Ideonella aquatica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018069755.1", "bioproject": "PRJNA224116", "biosample": "SAMN18680230", "wgs_master": "JAGQDE000000000.1", "refseq_category": "reference genome", "taxid": "2824119", "species_taxid": "2824119", "organism_name": "Ideonella aquatica", "infraspecific_name": "strain=4Y11", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/18", "asm_name": "ASM1806975v1", "asm_submitter": "Guangdong Academy of Sciences", "gbrs_paired_asm": "GCA_018069755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/069/755/GCF_018069755.1_ASM1806975v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5170988", "genome_size_ungapped": "5170988", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "58", "contig_count": "58", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018069755.1-RS_2024_09_19", "annotation_date": "2024-09-19", "total_gene_count": "4803", "protein_coding_gene_count": "4685", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-18", "dateModified": "2021-04-18", "datePublished": "2021-04-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Ideonella aquatica" ], "sample_taxid": [ "2824119" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Jiangmen" ], "sample_host_location_id": [], "data_size": "1.384 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5170988", "Number of Sequences": "58", "Longest Sequences (bp)": "483110", "N50 (bp)": "199164", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.7", "Number of CDSs": "4689", "Average Protein Length": "336.6", "Coding Ratio (%)": "91.6", "Number of rRNAs": "6", "Number of tRNAs": "63", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ideonella dechloratans", "strain": "strain=CCUG 30977", "accession": "GCA_008801845.1", "taxid": 36863, "species_taxid": 36863, "relation_to_type": "type", "validated": true, "ani": 82.336, "matched_fragments": 815, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella dechloratans", "strain": "strain=CCUG 30977", "accession": "GCA_021049305.1", "taxid": 36863, "species_taxid": 36863, "relation_to_type": "type", "validated": true, "ani": 82.3164, "matched_fragments": 831, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella benzenivorans", "strain": "strain=B7", "accession": "GCA_020387415.1", "taxid": 2831643, "species_taxid": 2831643, "relation_to_type": "type", "validated": true, "ani": 81.8996, "matched_fragments": 782, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella azotifigens", "strain": "strain=DSM 21438", "accession": "GCA_006519715.1", "taxid": 513160, "species_taxid": 513160, "relation_to_type": "type", "validated": true, "ani": 81.7954, "matched_fragments": 662, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella livida", "strain": "strain=TBM-1", "accession": "GCA_010499455.1", "taxid": 2707176, "species_taxid": 2707176, "relation_to_type": "type", "validated": true, "ani": 81.5703, "matched_fragments": 839, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus natans subsp. natans", "strain": "strain=DSM 6575", "accession": "GCA_000689195.1", "taxid": 882627, "species_taxid": 34103, "relation_to_type": "type", "validated": true, "ani": 81.3166, "matched_fragments": 761, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus natans", "strain": "strain=ATCC 13338", "accession": "GCA_900156335.1", "taxid": 34103, "species_taxid": 34103, "relation_to_type": "type", "validated": true, "ani": 81.2982, "matched_fragments": 784, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus sulfidivorans", "strain": "strain=D-501", "accession": "GCA_013426975.1", "taxid": 639200, "species_taxid": 639200, "relation_to_type": "type", "validated": true, "ani": 81.1951, "matched_fragments": 786, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_003349825.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 80.7892, "matched_fragments": 681, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_015476235.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 80.7589, "matched_fragments": 702, "total_fragments": 1692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_002933415.1", "taxid": 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89.7868, "matched_fragments": 795, "total_fragments": 1692, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ideonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016710065.1", "gtdb_species": "s__Ideonella sp016710065", "ani": 82.3777, "matched_fragments": 908, "total_fragments": 1692, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ideonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.07", "min_intra_species_ani": "99.00", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_008801845.1", "gtdb_species": "s__Ideonella dechloratans", "ani": 82.2716, "matched_fragments": 822, 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