{ "type": "genome", "identifier": "GCF_018069805.1", "organism": "Pseudoalteromonas ostreae", "title": "Pseudoalteromonas ostreae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universite de Bretagne Occidentale", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018069805.1", "bioproject": "PRJNA224116", "biosample": "SAMN18537376", "wgs_master": "JAGPYN000000000.1", "refseq_category": "na", "taxid": "2774154", "species_taxid": "2774154", "organism_name": "Pseudoalteromonas ostreae", "infraspecific_name": "strain=hOe-66", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/18", "asm_name": "ASM1806980v1", "asm_submitter": "Universite de Bretagne Occidentale", "gbrs_paired_asm": "GCA_018069805.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/069/805/GCF_018069805.1_ASM1806980v1", 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[], "sample_host_location": [ "France: Concarneau bay, Brittany, site Natura 2000 FR5300023" ], "sample_host_location_id": [], "data_size": "1.319 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4643030", "Number of Sequences": "101", "Longest Sequences (bp)": "325143", "N50 (bp)": "181424", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.3", "Number of CDSs": "4030", "Average Protein Length": "335.3", "Coding Ratio (%)": "87.3", "Number of rRNAs": "1", "Number of tRNAs": "88", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoalteromonas ostreae", "strain": "strain=hOe-66", "accession": "GCA_018069805.1", "taxid": 2774154, "species_taxid": 2774154, "relation_to_type": "type", "validated": 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1102, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas neustonica", "strain": "strain=PAMC 28425", "accession": "GCA_001653135.1", "taxid": 1840331, "species_taxid": 1840331, "relation_to_type": "type", "validated": true, "ani": 82.6924, "matched_fragments": 887, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas tetraodonis", "strain": "strain=GFC", "accession": "GCA_002310835.1", "taxid": 43659, "species_taxid": 43659, "relation_to_type": "suspected-type", "validated": true, "ani": 80.8523, "matched_fragments": 632, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella inventionis", "strain": "strain=KCTC 42807", "accession": "GCA_023283595.1", "taxid": 1738770, "species_taxid": 1738770, "relation_to_type": "type", "validated": true, "ani": 76.7602, "matched_fragments": 72, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella marinintestina", "strain": "strain=LMG 21403", "accession": "GCA_023283845.1", "taxid": 190305, "species_taxid": 190305, "relation_to_type": "type", "validated": true, "ani": 76.2118, "matched_fragments": 65, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella glacialipiscicola", "strain": "strain=LMG 23744", "accession": "GCA_023283485.1", "taxid": 614069, "species_taxid": 614069, "relation_to_type": "type", "validated": true, "ani": 75.8707, "matched_fragments": 59, "total_fragments": 1508, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018069805.1", "gtdb_species": "s__Pseudoalteromonas sp018069805", "ani": 100.0, "matched_fragments": 1505, "total_fragments": 1508, "gtdb_taxonomy": 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"gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "97.08", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001653135.1", "gtdb_species": "s__Pseudoalteromonas neustonica", "ani": 82.6718, "matched_fragments": 889, "total_fragments": 1508, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.11", "min_intra_species_ani": "98.62", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_002310835.1", "gtdb_species": "s__Pseudoalteromonas tetraodonis", "ani": 80.8585, "matched_fragments": 631, "total_fragments": 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