{ "type": "genome", "identifier": "GCF_018069865.1", "organism": "Ideonella paludis", "title": "Ideonella paludis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018069865.1", "bioproject": "PRJNA224116", "biosample": "SAMN18680237", "wgs_master": "JAGQDG000000000.1", "refseq_category": "reference genome", "taxid": "1233411", "species_taxid": "1233411", "organism_name": "Ideonella paludis", "infraspecific_name": "strain=KCTC 32238", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/18", "asm_name": "ASM1806986v1", "asm_submitter": "Guangdong Academy of Sciences", "gbrs_paired_asm": "GCA_018069865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/069/865/GCF_018069865.1_ASM1806986v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4800525", "genome_size_ungapped": "4800525", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018069865.1-RS_2024_09_19", "annotation_date": "2024-09-19", "total_gene_count": "4333", "protein_coding_gene_count": "4249", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-18", "dateModified": "2021-04-18", "datePublished": "2021-04-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Ideonella paludis" ], "sample_taxid": [ "1233411" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "1.326 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4800525", "Number of Sequences": "22", "Longest Sequences (bp)": "986224", "N50 (bp)": "604630", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.7", "Number of CDSs": "4288", "Average Protein Length": "339.5", "Coding Ratio (%)": "91.0", "Number of rRNAs": "4", "Number of tRNAs": "48", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ideonella paludis", "strain": "strain=KCTC 32238", "accession": "GCA_018069865.1", "taxid": 1233411, "species_taxid": 1233411, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1589, "total_fragments": 1589, "ani_threshold": 95, 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"GCA_013426975.1", "taxid": 639200, "species_taxid": 639200, "relation_to_type": "type", "validated": true, "ani": 78.7016, "matched_fragments": 449, "total_fragments": 1589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelomonas puraquae", "strain": "strain=CCUG 52769", "accession": "GCA_002205845.1", "taxid": 431059, "species_taxid": 431059, "relation_to_type": "type", "validated": true, "ani": 78.6638, "matched_fragments": 481, "total_fragments": 1589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas lata", "strain": "strain=NBRC 102462", "accession": "GCA_001571085.1", "taxid": 45677, "species_taxid": 45677, "relation_to_type": "type", "validated": true, "ani": 78.6551, "matched_fragments": 456, "total_fragments": 1589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas australica", "strain": "strain=DSM 1124", "accession": "GCA_000430725.1", "taxid": 364039, "species_taxid": 364039, 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