{ "type": "genome", "identifier": "GCF_018069925.1", "organism": "Flavobacterium erciyesense", "title": "Flavobacterium erciyesense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Erciyes University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018069925.1", "bioproject": "PRJNA224116", "biosample": "SAMN18709735", "wgs_master": "JAGPXB000000000.1", "refseq_category": "reference genome", "taxid": "2825842", "species_taxid": "2825842", "organism_name": "Flavobacterium erciyesense", "infraspecific_name": "strain=F-328", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/18", "asm_name": "ASM1806992v1", "asm_submitter": "Erciyes University", "gbrs_paired_asm": "GCA_018069925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/069/925/GCF_018069925.1_ASM1806992v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3433272", "genome_size_ungapped": "3433272", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018069925.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3050", "protein_coding_gene_count": "2984", "non_coding_gene_count": "51", "pubmed_id": "34515811" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-18", "dateModified": "2021-04-18", "datePublished": "2021-04-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium erciyesense" ], "sample_taxid": [ "2825842" ], "sample_host_organism": [ "Oncorhynchus mykiss" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Turkey:Mugla" ], "sample_host_location_id": [], "data_size": "0.964 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3433272", "Number of Sequences": "44", "Longest Sequences (bp)": "658422", "N50 (bp)": "235449", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.3", "Number of CDSs": "2957", "Average Protein Length": "335.6", "Coding Ratio (%)": "86.7", "Number of rRNAs": "1", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium erciyesense", "strain": "strain=F-328", "accession": "GCA_018069925.1", "taxid": 2825842, "species_taxid": 2825842, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1123, "total_fragments": 1124, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium turcicum", "strain": "strain=F-339", "accession": "GCA_011365745.1", "taxid": 2764718, "species_taxid": 2764718, "relation_to_type": "type", "validated": true, "ani": 93.8292, "matched_fragments": 946, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tiangeerense", "strain": "strain=CGMCC 1.6847", "accession": "GCA_007830355.1", "taxid": 459471, "species_taxid": 459471, "relation_to_type": "type", "validated": true, "ani": 83.109, "matched_fragments": 582, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glaciei", "strain": "strain=CGMCC 1.5380", "accession": "GCA_007994155.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 81.0032, "matched_fragments": 561, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glaciei", "strain": "strain=DSM 19728", "accession": "GCA_003350545.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 80.9308, "matched_fragments": 560, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrolimnae", "strain": "strain=LMG 22018", "accession": "GCA_003312425.1", "taxid": 249351, "species_taxid": 249351, "relation_to_type": "type", "validated": true, "ani": 80.354, "matched_fragments": 540, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium petrolei", "strain": "strain=Kopri-42", "accession": "GCA_003314435.2", "taxid": 2259594, "species_taxid": 2259594, "relation_to_type": "type", "validated": true, "ani": 80.3036, "matched_fragments": 541, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limicola", "strain": "strain=DSM 15094", "accession": "GCA_003634755.1", "taxid": 180441, "species_taxid": 180441, "relation_to_type": "type", "validated": true, "ani": 80.0852, "matched_fragments": 497, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sinopsychrotolerans", "strain": "strain=CGMCC 1.8704", "accession": "GCA_900110375.1", "taxid": 604089, "species_taxid": 604089, "relation_to_type": "type", "validated": true, "ani": 79.9738, "matched_fragments": 504, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xueshanense", "strain": "strain=CGMCC 1.9227", "accession": "GCA_900112975.1", "taxid": 935223, "species_taxid": 935223, "relation_to_type": "type", "validated": true, "ani": 79.7429, "matched_fragments": 489, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flabelliforme", "strain": "strain=P4023", "accession": "GCA_017948675.1", "taxid": 2816119, "species_taxid": 2816119, "relation_to_type": "type", "validated": true, "ani": 79.1777, "matched_fragments": 433, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium kayseriense", "strain": "strain=F-47", "accession": "GCA_014305095.1", "taxid": 2764714, "species_taxid": 2764714, "relation_to_type": "type", "validated": true, "ani": 78.9193, "matched_fragments": 351, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium degerlachei", "strain": "strain=DSM 15718", "accession": "GCA_900106645.1", "taxid": 229203, "species_taxid": 229203, "relation_to_type": "type", "validated": true, "ani": 78.7508, "matched_fragments": 358, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_902804475.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 78.6589, "matched_fragments": 329, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_904425415.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 78.6055, "matched_fragments": 338, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium alvei", "strain": "strain=HR-AY", "accession": "GCA_002920895.1", "taxid": 2080416, "species_taxid": 2080416, "relation_to_type": "type", "validated": true, "ani": 78.5681, "matched_fragments": 313, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 78.4482, "matched_fragments": 333, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hercynium", "strain": "strain=DSM 18292", "accession": "GCA_002217285.1", "taxid": 387094, "species_taxid": 387094, "relation_to_type": "type", "validated": true, "ani": 78.4469, "matched_fragments": 330, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 78.3937, "matched_fragments": 324, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", 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543, "total_fragments": 1124, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007830355.1", "gtdb_species": "s__Flavobacterium tiangeerense", "ani": 83.1236, "matched_fragments": 581, "total_fragments": 1124, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.91", "min_intra_species_ani": "95.91", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009764685.1", "gtdb_species": "s__Flavobacterium sp009764685", "ani": 82.9761, "matched_fragments": 580, "total_fragments": 1124, 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