{ "type": "genome", "identifier": "GCF_018122655.1", "organism": "Stakelama marina", "title": "Stakelama marina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ocean University of China", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018122655.1", "bioproject": "PRJNA224116", "biosample": "SAMN18522565", "wgs_master": "JAGRQC000000000.1", "refseq_category": "reference genome", "taxid": "2826939", "species_taxid": "2826939", "organism_name": "Stakelama marina", "infraspecific_name": "strain=LXI357", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/21", "asm_name": "ASM1812265v1", "asm_submitter": "Ocean University of China", "gbrs_paired_asm": "GCA_018122655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/122/655/GCF_018122655.1_ASM1812265v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3326759", "genome_size_ungapped": "3326759", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018122655.1-RS_2024_05_29", "annotation_date": "2024-05-29", "total_gene_count": "3259", "protein_coding_gene_count": "3186", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-21", "dateModified": "2021-04-21", "datePublished": "2021-04-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Stakelama marina" ], "sample_taxid": [ "2826939" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: the Okinawa Trough" ], "sample_host_location_id": [], "data_size": "0.915 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3326759", "Number of Sequences": "14", "Longest Sequences (bp)": "1326465", "N50 (bp)": "695400", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.1", "Number of CDSs": "3202", "Average Protein Length": "317.4", "Coding Ratio (%)": "91.7", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Stakelama pacifica", "strain": "strain=DSM 25059", "accession": "GCA_004361835.1", "taxid": 517720, "species_taxid": 517720, "relation_to_type": "type", "validated": true, "ani": 80.5508, "matched_fragments": 573, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stakelama pacifica", "strain": "strain=CGMCC 1.7294", "accession": "GCA_014645395.1", "taxid": 517720, "species_taxid": 517720, "relation_to_type": "type", "validated": true, "ani": 80.4877, "matched_fragments": 576, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stakelama flava", "strain": "strain=CBK3Z-3", "accession": "GCA_019351405.1", "taxid": 2860338, "species_taxid": 2860338, "relation_to_type": "type", "validated": true, "ani": 79.9266, "matched_fragments": 514, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stakelama sediminis", "strain": "strain=DSM 27203", "accession": "GCA_014199335.1", "taxid": 463200, "species_taxid": 463200, "relation_to_type": "type", "validated": true, "ani": 79.8415, "matched_fragments": 543, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"GCA_004135605.1", "taxid": 429134, "species_taxid": 429134, "relation_to_type": "type", "validated": true, "ani": 79.2807, "matched_fragments": 428, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas panni", "strain": "strain=DSM 15761", "accession": "GCA_022664435.1", "taxid": 237612, "species_taxid": 237612, "relation_to_type": "type", "validated": true, "ani": 79.1492, "matched_fragments": 477, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hankookensis", "strain": "strain=KCTC 22579", "accession": "GCA_022664465.1", "taxid": 563996, "species_taxid": 563996, "relation_to_type": "type", "validated": true, "ani": 79.0382, "matched_fragments": 506, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas glacialis", "strain": "strain=CGMCC 1.8957", "accession": "GCA_014653575.1", "taxid": 658225, "species_taxid": 658225, "relation_to_type": "type", "validated": true, "ani": 78.982, "matched_fragments": 488, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas alpina", "strain": "strain=DSM 22537", "accession": "GCA_025370095.1", "taxid": 653931, "species_taxid": 653931, "relation_to_type": "type", "validated": true, "ani": 78.9695, "matched_fragments": 482, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas rubra", "strain": "strain=CGMCC 1.9113", "accession": "GCA_900115745.1", "taxid": 634430, "species_taxid": 634430, "relation_to_type": "type", "validated": true, "ani": 78.8574, "matched_fragments": 393, "total_fragments": 1101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas asaccharolytica", "strain": "strain=NBRC 15499", "accession": "GCA_001598355.1", "taxid": 40681, "species_taxid": 40681, "relation_to_type": "type", "validated": true, 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