{ "type": "genome", "identifier": "GCF_018127725.1", "organism": "Streptococcus lactarius", "title": "Streptococcus lactarius", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Forsyth Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018127725.1", "bioproject": "PRJNA224116", "biosample": "SAMN18352172", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "684066", "species_taxid": "684066", "organism_name": "Streptococcus lactarius", "infraspecific_name": "strain=CCUG 66490", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/22", "asm_name": "ASM1812772v1", "asm_submitter": "The Forsyth Institute", "gbrs_paired_asm": "GCA_018127725.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/127/725/GCF_018127725.1_ASM1812772v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2144372", "genome_size_ungapped": "2144372", "gc_percent": "41.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018127725.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2067", "protein_coding_gene_count": "1966", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-22", "dateModified": "2021-04-22", "datePublished": "2021-04-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus lactarius" ], "sample_taxid": [ "684066" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "0.606 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2144372", "Number of Sequences": "1", "Longest Sequences (bp)": "2144372", "N50 (bp)": "2144372", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.6", "Number of CDSs": "2000", "Average Protein Length": "311.6", "Coding Ratio (%)": "87.2", "Number of rRNAs": "12", "Number of tRNAs": "62", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus parasanguinis", "strain": "strain=ATCC 15912", "accession": "GCA_000164675.2", "taxid": 1318, "species_taxid": 1318, "relation_to_type": "suspected-type", "validated": true, "ani": 88.331, "matched_fragments": 526, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasanguinis", "strain": "strain=NCTC12854", "accession": "GCA_900459355.1", "taxid": 1318, "species_taxid": 1318, "relation_to_type": "suspected-type", "validated": true, "ani": 88.2703, "matched_fragments": 524, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ilei", "strain": "strain=I-G2", "accession": "GCA_000479335.1", "taxid": 1156431, "species_taxid": 1156431, "relation_to_type": "type", "validated": true, "ani": 84.3927, "matched_fragments": 354, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus australis", "strain": "strain=NCTC13166", "accession": "GCA_900476055.1", "taxid": 113107, "species_taxid": 113107, "relation_to_type": "type", "validated": true, "ani": 84.3784, "matched_fragments": 377, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus koreensis", "strain": "strain=JS71", "accession": "GCA_003627135.1", "taxid": 2382163, "species_taxid": 2382163, "relation_to_type": "type", "validated": true, "ani": 84.1751, "matched_fragments": 368, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus australis", "strain": "strain=ATCC 700641", "accession": "GCA_000186465.1", "taxid": 113107, "species_taxid": 113107, "relation_to_type": "type", "validated": true, "ani": 84.0453, "matched_fragments": 383, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus rubneri", "strain": "strain=DSM 26920", "accession": "GCA_004785935.1", "taxid": 1234680, "species_taxid": 1234680, "relation_to_type": "type", "validated": true, "ani": 83.9957, "matched_fragments": 364, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus xiaochunlingii", "strain": "strain=E24", "accession": "GCA_006385805.1", "taxid": 2589788, "species_taxid": 2589788, "relation_to_type": "type", "validated": true, "ani": 83.7934, "matched_fragments": 363, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 80.9583, "matched_fragments": 209, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pneumoniae", "strain": "strain=NCTC7465", "accession": "GCA_001457635.1", "taxid": 1313, "species_taxid": 1313, "relation_to_type": "type", "validated": true, "ani": 80.644, "matched_fragments": 202, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 80.3989, "matched_fragments": 193, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pneumoniae", "strain": "strain=CCUG 28588", "accession": "GCA_001679535.1", "taxid": 1313, "species_taxid": 1313, "relation_to_type": "type", "validated": true, "ani": 80.3254, "matched_fragments": 188, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 80.2204, "matched_fragments": 107, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus ruminantium", "strain": "strain=GUT187T", "accession": "GCA_003609975.1", "taxid": 1917441, "species_taxid": 1917441, "relation_to_type": "type", "validated": true, "ani": 79.5347, "matched_fragments": 89, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 79.4938, "matched_fragments": 100, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus catagoni", "strain": "strain=99-1/2017", "accession": "GCA_011421425.1", "taxid": 2654874, "species_taxid": 2654874, "relation_to_type": "type", "validated": true, "ani": 78.8142, "matched_fragments": 67, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016642265.1", "gtdb_species": "s__Streptococcus lactarius", "ani": 99.9508, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptococcus", "lactarius" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }