{ "type": "genome", "identifier": "GCF_018128545.1", "organism": "Sinanaerobacter chloroacetimidivorans", "title": "Sinanaerobacter chloroacetimidivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sinoanaerobacter chloroacetimidivorans BAD-6", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018128545.1", "bioproject": "PRJNA224116", "biosample": "SAMN18793570", "wgs_master": "JAGSND000000000.1", "refseq_category": "reference genome", "taxid": "2818044", "species_taxid": "2818044", "organism_name": "Sinanaerobacter chloroacetimidivorans", "infraspecific_name": "strain=BAD-6", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/22", "asm_name": "ASM1812854v1", "asm_submitter": "Sinoanaerobacter chloroacetimidivorans BAD-6", "gbrs_paired_asm": "GCA_018128545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/128/545/GCF_018128545.1_ASM1812854v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4778346", "genome_size_ungapped": "4777918", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "63", "contig_count": "63", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018128545.1-RS_2024_11_20", "annotation_date": "2024-11-20", "total_gene_count": "4602", "protein_coding_gene_count": "4489", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-22", "dateModified": "2021-04-22", "datePublished": "2021-04-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Sinanaerobacter chloroacetimidivorans" ], "sample_taxid": [ "2818044" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.358 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4778346", "Number of Sequences": "63", "Longest Sequences (bp)": "605890", "N50 (bp)": "225014", "Gap Ratio (%)": "0.008957", "GCcontent (%)": "42.7", "Number of CDSs": "4518", "Average Protein Length": "311.3", "Coding Ratio (%)": "88.3", "Number of rRNAs": "5", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sinanaerobacter chloroacetimidivorans", "strain": "strain=BAD-6", "accession": "GCA_018128545.1", "taxid": 2818044, "species_taxid": 2818044, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1562, "total_fragments": 1565, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aminipila luticellarii", "strain": "strain=JN-18", "accession": "GCA_004103735.1", "taxid": 2507160, "species_taxid": 2507160, "relation_to_type": "type", "validated": true, "ani": 78.7447, "matched_fragments": 72, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaerovorax odorimutans", "strain": "strain=DSM 5092", "accession": "GCA_000426305.1", "taxid": 109327, "species_taxid": 109327, "relation_to_type": "type", "validated": true, "ani": 77.3763, "matched_fragments": 78, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zhenpiania hominis", "strain": "strain=BX12", "accession": "GCA_014333425.1", "taxid": 2763644, "species_taxid": 2763644, "relation_to_type": "type", "validated": true, "ani": 76.1427, "matched_fragments": 50, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.92, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018128545.1", "gtdb_species": "s__BAD-6 sp018128545", "ani": 100.0, "matched_fragments": 1562, "total_fragments": 1565, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__BAD-6", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_015243575.1", "gtdb_species": "s__MT110 sp015243575", "ani": 78.1842, "matched_fragments": 210, "total_fragments": 1565, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__MT110", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017168145.1", "gtdb_species": "s__IOR16 sp017168145", "ani": 77.4578, "matched_fragments": 64, "total_fragments": 1565, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__IOR16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000426305.1", "gtdb_species": "s__Anaerovorax odorimutans", "ani": 77.3763, "matched_fragments": 78, "total_fragments": 1565, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__Anaerovorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012838265.1", "gtdb_species": "s__DUPP01 sp012838265", "ani": 76.9439, "matched_fragments": 69, "total_fragments": 1565, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__DUPP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014333425.1", "gtdb_species": "s__BX12 sp014333425", "ani": 76.1427, "matched_fragments": 50, "total_fragments": 1565, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;g__BX12", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.83", "min_intra_species_ani": "98.83", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Sinanaerobacter", "chloroacetimidivorans" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }