{ "type": "genome", "identifier": "GCF_018141405.1", "organism": "Serpentinicella alkaliphila", "title": "Serpentinicella alkaliphila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Mediterranean Institute of Oceanography (MIO), UMR 7294", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018141405.1", "bioproject": "PRJNA224116", "biosample": "SAMN14689429", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1734049", "species_taxid": "1734049", "organism_name": "Serpentinicella alkaliphila", "infraspecific_name": "strain=3B", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/27", "asm_name": "ASM1814140v1", "asm_submitter": "Mediterranean Institute of Oceanography (MIO), UMR 7294", "gbrs_paired_asm": "GCA_018141405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/141/405/GCF_018141405.1_ASM1814140v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3257681", "genome_size_ungapped": "3257581", "gc_percent": "32.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018141405.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "3453", "protein_coding_gene_count": "3202", "non_coding_gene_count": "198", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-27", "dateModified": "2021-04-27", "datePublished": "2021-04-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Serpentinicella alkaliphila" ], "sample_taxid": [ "1734049" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Caledonia: Prony Bay, Riviere des Kaoris" ], "sample_host_location_id": [], "data_size": "0.893 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3257581", "Number of Sequences": "1", "Longest Sequences (bp)": "3257581", "N50 (bp)": "3257581", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.6", "Number of CDSs": "3282", "Average Protein Length": "276.6", "Coding Ratio (%)": "83.6", "Number of rRNAs": "42", "Number of tRNAs": "152", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Serpentinicella alkaliphila", "strain": "strain=3B", "accession": "GCA_018141405.1", "taxid": 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"status": "below_threshold" }, { "organism_name": "Gottschalkia purinilytica", "strain": "strain=DSM 1384", "accession": "GCA_001190785.1", "taxid": 1503, "species_taxid": 1503, "relation_to_type": "type", "validated": true, "ani": 75.5751, "matched_fragments": 57, "total_fragments": 1085, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018141405.1", "gtdb_species": "s__Serpentinicella alkaliphila", "ani": 100.0, "matched_fragments": 1085, "total_fragments": 1085, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Natronincolaceae;g__Serpentinicella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900002575.1", 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