{ "type": "genome", "identifier": "GCF_018145655.1", "organism": "Campylobacter anatolicus", "title": "Campylobacter anatolicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Erciyes Univ. Faculty of Veterinary Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018145655.1", "bioproject": "PRJNA224116", "biosample": "SAMN18806163", "wgs_master": "JAGSSY000000000.1", "refseq_category": "reference genome", "taxid": "2829105", "species_taxid": "2829105", "organism_name": "Campylobacter anatolicus", "infraspecific_name": "strain=faydin-G140", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/26", "asm_name": "ASM1814565v1", "asm_submitter": "Erciyes Univ. Faculty of Veterinary Medicine", "gbrs_paired_asm": "GCA_018145655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/145/655/GCF_018145655.1_ASM1814565v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1830774", "genome_size_ungapped": "1830676", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018145655.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "1914", "protein_coding_gene_count": "1849", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-26", "dateModified": "2021-04-26", "datePublished": "2021-04-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Campylobacter anatolicus" ], "sample_taxid": [ "2829105" ], "sample_host_organism": [ "Anatolian Ground Squirrel (Spermophilus xanthoprymnus)" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Turkey: Kayseri" ], "sample_host_location_id": [], "data_size": "0.508 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1830774", "Number of Sequences": "13", "Longest Sequences (bp)": "606580", "N50 (bp)": "456851", "Gap Ratio (%)": "0.005353", "GCcontent (%)": "35.2", "Number of CDSs": "1859", "Average Protein Length": "294.3", "Coding Ratio (%)": "89.6", "Number of rRNAs": "2", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Campylobacter anatolicus", "strain": "strain=faydin-G140", "accession": "GCA_018145655.1", "taxid": 2829105, "species_taxid": 2829105, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 605, "total_fragments": 606, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Campylobacter mucosalis", "strain": "strain=ATCC 43264", "accession": "GCA_013372205.1", "taxid": 202, "species_taxid": 202, "relation_to_type": "type", "validated": true, "ani": 78.0589, "matched_fragments": 187, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter mucosalis", "strain": "strain=ATCC 43264", "accession": "GCA_012978755.1", "taxid": 202, "species_taxid": 202, "relation_to_type": "type", "validated": true, "ani": 77.9301, "matched_fragments": 179, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter curvus", "strain": "strain=FDAARGOS_1547", "accession": "GCA_020736225.1", "taxid": 200, "species_taxid": 200, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8649, "matched_fragments": 146, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter curvus", "strain": "strain=ATCC 35224", "accession": "GCA_013372125.1", "taxid": 200, "species_taxid": 200, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8428, "matched_fragments": 143, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter curvus", "strain": "strain=DSM 6644", "accession": "GCA_000376325.1", "taxid": 200, "species_taxid": 200, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7889, "matched_fragments": 149, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter lanienae", "strain": "strain=NCTC 13004", "accession": "GCA_002139935.1", "taxid": 75658, "species_taxid": 75658, "relation_to_type": "type", "validated": true, "ani": 77.6729, "matched_fragments": 62, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter concisus", "strain": "strain=ATCC 33237", "accession": "GCA_001298465.1", "taxid": 199, "species_taxid": 199, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4287, "matched_fragments": 187, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter massiliensis", "strain": "strain=Marseille-Q3452", "accession": "GCA_014253065.1", "taxid": 2762557, "species_taxid": 2762557, "relation_to_type": "type", "validated": true, "ani": 76.9409, "matched_fragments": 67, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter rectus", "strain": "strain=FDAARGOS_1549", "accession": "GCA_020736205.1", "taxid": 203, "species_taxid": 203, "relation_to_type": "type", "validated": true, "ani": 76.8648, "matched_fragments": 73, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter hyointestinalis subsp. lawsonii", "strain": "strain=CHY5", "accession": "GCA_003289475.1", "taxid": 91353, "species_taxid": 198, "relation_to_type": "type", "validated": true, "ani": 76.6134, "matched_fragments": 79, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter geochelonis", "strain": "strain=RC20", "accession": "GCA_900063025.1", "taxid": 1780362, "species_taxid": 1780362, "relation_to_type": "type", "validated": true, "ani": 76.5538, "matched_fragments": 94, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter geochelonis", "strain": "strain=LMG 29375", "accession": "GCA_013201685.1", "taxid": 1780362, "species_taxid": 1780362, "relation_to_type": "type", "validated": true, "ani": 76.5297, "matched_fragments": 94, "total_fragments": 606, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018145735.1", "gtdb_species": "s__Campylobacter_A sp018145735", "ani": 99.0481, "matched_fragments": 559, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.06", "min_intra_species_ani": "99.05", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_004803835.1", "gtdb_species": "s__Campylobacter_A sp004803835", "ani": 78.0687, "matched_fragments": 197, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.48", "min_intra_species_ani": "98.76", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_002165775.1", "gtdb_species": "s__Campylobacter_A concisus_E", "ani": 77.7162, "matched_fragments": 176, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_902460845.1", "gtdb_species": "s__Campylobacter_A concisus_X", "ani": 77.6807, "matched_fragments": 179, "total_fragments": 606, "gtdb_taxonomy": 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"d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.031, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002139855.1", "gtdb_species": "s__Campylobacter sp002139855", "ani": 77.5411, "matched_fragments": 65, "total_fragments": 606, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.28", "min_intra_species_ani": "98.16", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003048675.2", "gtdb_species": "s__Campylobacter_A concisus_F", "ani": 77.44, "matched_fragments": 185, "total_fragments": 606, "gtdb_taxonomy": 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"coccobacillus_cell_shape": 0.05, "vibrio_cell_shape": 0.1, "spiral_cell_shape": 0.5 }, "_genome_taxon": [ "Campylobacter", "anatolicus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }