{ "type": "genome", "identifier": "GCF_018224015.1", "organism": "Pseudarthrobacter albicanus", "title": "Pseudarthrobacter albicanus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Beijing Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018224015.1", "bioproject": "PRJNA224116", "biosample": "SAMN18647373", "wgs_master": "JAGPOT000000000.1", "refseq_category": "reference genome", "taxid": "2823873", "species_taxid": "2823873", "organism_name": "Pseudarthrobacter albicanus", "infraspecific_name": "strain=NJ-Z5", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/02", "asm_name": "ASM1822401v1", "asm_submitter": "Beijing Institute of Technology", "gbrs_paired_asm": "GCA_018224015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/224/015/GCF_018224015.1_ASM1822401v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4565939", "genome_size_ungapped": "4565939", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "241", "contig_count": "241", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018224015.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "4374", "protein_coding_gene_count": "4115", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-02", "dateModified": "2021-05-02", "datePublished": "2021-05-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudarthrobacter albicanus" ], "sample_taxid": [ "2823873" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "1.269 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4565939", "Number of Sequences": "241", "Longest Sequences (bp)": "144405", "N50 (bp)": "50618", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.1", "Number of CDSs": "4232", "Average Protein Length": "302.7", "Coding Ratio (%)": "84.2", "Number of rRNAs": "1", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudarthrobacter psychrotolerans", "strain": "strain=YJ56", "accession": "GCA_009911795.1", "taxid": 2697569, "species_taxid": 2697569, "relation_to_type": "type", "validated": true, "ani": 81.8887, "matched_fragments": 761, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter globiformis", "strain": "strain=NBRC 12137", "accession": "GCA_000238915.2", "taxid": 1665, "species_taxid": 1665, "relation_to_type": "type", "validated": true, "ani": 81.8886, "matched_fragments": 728, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter pascens", "strain": "strain=DSM 20545", "accession": "GCA_017052465.1", "taxid": 1677, "species_taxid": 1677, "relation_to_type": "type", "validated": true, "ani": 81.8796, "matched_fragments": 708, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter ipis", "strain": "strain=IA7", "accession": "GCA_014694315.1", "taxid": 2716202, "species_taxid": 2716202, "relation_to_type": "type", "validated": true, "ani": 81.7148, "matched_fragments": 727, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter sulfonivorans", "strain": "strain=ALL", "accession": "GCA_014712225.1", "taxid": 121292, "species_taxid": 121292, "relation_to_type": "type", "validated": true, "ani": 81.6577, "matched_fragments": 705, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter polychromogenes", "strain": "strain=CGMCC 1.1927", "accession": "GCA_014644495.1", "taxid": 1676, "species_taxid": 1676, "relation_to_type": "type", "validated": true, "ani": 81.3331, "matched_fragments": 642, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter scleromae", "strain": "strain=CGMCC 1.3601", "accession": "GCA_014644515.1", "taxid": 158897, "species_taxid": 158897, "relation_to_type": "type", "validated": true, "ani": 81.2935, "matched_fragments": 632, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter equi", "strain": "strain=IMMIB L-1606", "accession": "GCA_900105535.1", "taxid": 728066, "species_taxid": 728066, "relation_to_type": "type", "validated": true, "ani": 81.2898, "matched_fragments": 638, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter celericrescens", "strain": "strain=NEAU-SA2", "accession": "GCA_003614925.1", "taxid": 2320851, "species_taxid": 2320851, "relation_to_type": "type", "validated": true, "ani": 81.2468, "matched_fragments": 644, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter enclensis", "strain": "strain=NIO-1008", "accession": "GCA_900094675.1", "taxid": 993070, "species_taxid": 993070, "relation_to_type": "type", "validated": true, "ani": 81.2021, "matched_fragments": 656, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter enclensis", "strain": "strain=NIO-1008", "accession": "GCA_001457025.1", "taxid": 993070, "species_taxid": 993070, "relation_to_type": "type", "validated": true, "ani": 81.2007, "matched_fragments": 655, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter siccitolerans", "strain": "strain=4J27", "accession": "GCA_001046895.1", "taxid": 861266, "species_taxid": 861266, "relation_to_type": "type", "validated": true, "ani": 81.1841, "matched_fragments": 668, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter cupressi", "strain": "strain=DSM 24664", "accession": "GCA_013409905.1", "taxid": 1045773, "species_taxid": 1045773, "relation_to_type": "type", "validated": true, "ani": 81.1065, "matched_fragments": 629, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter cupressi", "strain": "strain=CGMCC 1.10783", "accession": "GCA_900099975.1", "taxid": 1045773, "species_taxid": 1045773, "relation_to_type": "type", "validated": true, "ani": 81.0411, "matched_fragments": 625, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter chlorophenolicus", "strain": "strain=A6", "accession": "GCA_900104315.1", "taxid": 85085, "species_taxid": 85085, "relation_to_type": "type", "validated": true, "ani": 80.9943, "matched_fragments": 684, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter chlorophenolicus", "strain": "strain=A6", "accession": "GCA_000022025.1", "taxid": 85085, "species_taxid": 85085, "relation_to_type": "type", "validated": true, "ani": 80.9086, "matched_fragments": 685, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter ulcerisalmonis", "strain": "", "accession": "GCA_900609065.1", "taxid": 2483813, "species_taxid": 2483813, "relation_to_type": "type", "validated": true, "ani": 80.1592, "matched_fragments": 527, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenarthrobacter nicotinovorans", "strain": "strain=ATCC 49919", "accession": "GCA_021919345.1", "taxid": 29320, "species_taxid": 29320, "relation_to_type": "suspected-type", "validated": true, "ani": 79.94, "matched_fragments": 542, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_017898065.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 79.2996, "matched_fragments": 368, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_018622995.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 79.2648, "matched_fragments": 372, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter mobilis", "strain": "strain=E918", "accession": "GCA_012395835.1", "taxid": 2724944, "species_taxid": 2724944, "relation_to_type": "type", "validated": true, "ani": 79.1343, "matched_fragments": 463, "total_fragments": 1421, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018224015.1", "gtdb_species": "s__Arthrobacter_I sp018224015", "ani": 100.0, "matched_fragments": 1412, "total_fragments": 1421, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_004798705.1", "gtdb_species": "s__Arthrobacter_I sp004798705", "ani": 88.012, "matched_fragments": 922, "total_fragments": 1421, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001750145.1", "gtdb_species": "s__Arthrobacter_I sp001750145", "ani": 84.7093, "matched_fragments": 861, "total_fragments": 1421, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009928425.1", "gtdb_species": "s__Arthrobacter_I sp009928425", "ani": 84.6661, "matched_fragments": 834, "total_fragments": 1421, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000427315.1", "gtdb_species": "s__Arthrobacter_I sp000427315", "ani": 84.5684, "matched_fragments": 687, "total_fragments": 1421, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000374925.1", "gtdb_species": "s__Arthrobacter_I sp000374925", "ani": 84.4028, "matched_fragments": 866, "total_fragments": 1421, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.54", "min_intra_species_ani": "97.54", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007679325.1", "gtdb_species": "s__Arthrobacter_I sp007679325", "ani": 84.321, "matched_fragments": 813, "total_fragments": 1421, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003097355.1", "gtdb_species": "s__Arthrobacter_I sp003097355", "ani": 84.2705, "matched_fragments": 873, "total_fragments": 1421, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.72", "min_intra_species_ani": "95.72", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001512305.1", "gtdb_species": "s__Arthrobacter_I sp001512305", "ani": 84.2695, "matched_fragments": 820, "total_fragments": 1421, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013359735.1", "gtdb_species": "s__Arthrobacter_I sp013359735", "ani": 84.2501, "matched_fragments": 785, "total_fragments": 1421, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900102895.1", "gtdb_species": "s__Arthrobacter_I sp900102895", "ani": 84.1996, "matched_fragments": 851, "total_fragments": 1421, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900168135.1", "gtdb_species": "s__Arthrobacter_I sp900168135", "ani": 84.1324, "matched_fragments": 864, "total_fragments": 1421, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.10", "min_intra_species_ani": "95.10", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900102785.1", "gtdb_species": "s__Arthrobacter_I sp900102785", "ani": 84.0835, "matched_fragments": 879, "total_fragments": 1421, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003352915.1", "gtdb_species": "s__Arthrobacter_I sp003352915", "ani": 83.9118, "matched_fragments": 850, "total_fragments": 1421, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003634095.1", "gtdb_species": "s__Arthrobacter_I oryzae", "ani": 83.8755, "matched_fragments": 832, "total_fragments": 1421, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900116495.1", "gtdb_species": "s__Arthrobacter_I sp900116495", "ani": 83.7522, "matched_fragments": 827, "total_fragments": 1421, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000876655.1", "gtdb_species": "s__Arthrobacter_I sp000876655", "ani": 82.5675, "matched_fragments": 761, "total_fragments": 1421, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_I", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017368795.1", "gtdb_species": "s__PO-11 sp017368795", "ani": 81.782, "matched_fragments": 688, "total_fragments": 1421, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__PO-11", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.243, "cell_length": 0.17, "doubling_h": null, "growth_tmp": 28.8, "optimum_tmp": 26.8, "optimum_ph": 7.25, "genome_size": 4731532.616, "gc_content": 64.319, "coding_genes": 4335.111, "rRNA16S_genes": 4.666, "tRNA_genes": 62.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.75, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.25, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pseudarthrobacter", "albicanus" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }