{ "type": "genome", "identifier": "GCF_018224955.1", "organism": "Thetidibacter halocola", "title": "Thetidibacter halocola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Keimyung University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018224955.1", "bioproject": "PRJNA224116", "biosample": "SAMN18744138", "wgs_master": "JAGTUU000000000.1", "refseq_category": "reference genome", "taxid": "2827239", "species_taxid": "2827239", "organism_name": "Thetidibacter halocola", "infraspecific_name": "strain=KMU-90", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/02", "asm_name": "ASM1822495v1", "asm_submitter": "Keimyung University", "gbrs_paired_asm": "GCA_018224955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/224/955/GCF_018224955.1_ASM1822495v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4844583", "genome_size_ungapped": "4844583", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018224955.1-RS_2024_05_18", "annotation_date": "2024-05-18", "total_gene_count": "4531", "protein_coding_gene_count": "4411", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-02", "dateModified": "2021-05-02", "datePublished": "2021-05-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Thetidibacter halocola" ], "sample_taxid": [ "2827239" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Gangwon-do" ], "sample_host_location_id": [], "data_size": "1.324 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4844583", "Number of Sequences": "22", "Longest Sequences (bp)": "955912", "N50 (bp)": "549061", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.5", "Number of CDSs": "4509", "Average Protein Length": "327.2", "Coding Ratio (%)": "91.3", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mameliella alba", "strain": "strain=DSM 26384", "accession": "GCA_003051025.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 80.3963, "matched_fragments": 818, "total_fragments": 1604, 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{ "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 79.5427, "matched_fragments": 670, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger profundus", "strain": "strain=JLT2016", "accession": "GCA_001969385.1", "taxid": 1229727, "species_taxid": 1229727, "relation_to_type": "type", "validated": true, "ani": 79.5353, "matched_fragments": 687, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger profundus", "strain": "strain=CGMCC 1.12377", "accession": "GCA_014637265.1", "taxid": 1229727, "species_taxid": 1229727, "relation_to_type": "type", "validated": true, "ani": 79.4804, "matched_fragments": 670, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allosediminivita pacifica", "strain": "strain=CGMCC 1.12410", "accession": "GCA_014637495.1", "taxid": 1267769, "species_taxid": 1267769, "relation_to_type": "type", "validated": true, "ani": 79.3559, "matched_fragments": 613, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allosediminivita pacifica", "strain": "strain=DSM 29329", "accession": "GCA_003054175.1", "taxid": 1267769, "species_taxid": 1267769, "relation_to_type": "type", "validated": true, "ani": 79.2665, "matched_fragments": 615, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax isoporae", "strain": "strain=LMG 25204", "accession": "GCA_000521865.1", "taxid": 591206, "species_taxid": 591206, "relation_to_type": "type", "validated": true, "ani": 79.2414, "matched_fragments": 663, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yangia pacifica", "strain": "strain=CGMCC 1.3455", "accession": "GCA_900100725.1", "taxid": 311180, "species_taxid": 311180, "relation_to_type": "suspected-type", "validated": true, "ani": 79.2245, "matched_fragments": 697, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yangia pacifica", "strain": "strain=DSM 26894", "accession": "GCA_900116195.1", "taxid": 311180, "species_taxid": 311180, "relation_to_type": "suspected-type", "validated": true, "ani": 79.2097, "matched_fragments": 702, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella sediminis", "strain": "strain=DP3N28-2", "accession": "GCA_019218285.1", "taxid": 2836866, "species_taxid": 2836866, "relation_to_type": "type", "validated": true, "ani": 79.1087, "matched_fragments": 680, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 79.1018, "matched_fragments": 550, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 79.0825, "matched_fragments": 581, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum steppense", "strain": "strain=DSM 21153", "accession": "GCA_004339675.1", "taxid": 540251, "species_taxid": 540251, "relation_to_type": "type", "validated": true, "ani": 79.0771, "matched_fragments": 549, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria sediminis", "strain": "strain=CAU 1488", "accession": "GCA_005938215.1", "taxid": 2583820, "species_taxid": 2583820, "relation_to_type": "type", "validated": true, "ani": 79.0231, "matched_fragments": 517, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria pomeroyi", "strain": "strain=DSS-3", "accession": "GCA_000011965.2", "taxid": 89184, "species_taxid": 89184, "relation_to_type": "suspected-type", "validated": true, "ani": 78.9788, "matched_fragments": 582, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola marinus", "strain": "strain=LMG 23705", "accession": "GCA_002786295.1", "taxid": 396013, "species_taxid": 396013, "relation_to_type": "type", "validated": true, "ani": 78.8355, "matched_fragments": 529, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger aestuarii", "strain": "strain=AD8", "accession": "GCA_008930655.1", "taxid": 568098, "species_taxid": 568098, "relation_to_type": "type", "validated": true, "ani": 78.7691, "matched_fragments": 546, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 78.7096, "matched_fragments": 545, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger aestuarii", "strain": "strain=DSM 22011", "accession": "GCA_003259905.1", "taxid": 568098, "species_taxid": 568098, "relation_to_type": "type", "validated": true, "ani": 78.6243, "matched_fragments": 558, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius atlanticus", "strain": "strain=R12B", "accession": "GCA_001441615.1", "taxid": 1641875, "species_taxid": 1641875, "relation_to_type": "type", "validated": true, "ani": 78.4674, "matched_fragments": 560, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 78.1671, "matched_fragments": 428, "total_fragments": 1604, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018224955.1", "gtdb_species": "s__Aestuariicoccus sp018224955", "ani": 100.0, "matched_fragments": 1602, "total_fragments": 1604, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Aestuariicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900184945.1", "gtdb_species": "s__Maliponia aquimaris", 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