{
    "type": "genome",
    "identifier": "GCF_018271975.1",
    "organism": "Carboxylicivirga mesophila",
    "title": "Carboxylicivirga mesophila",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shandong University at Weihai",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_018271975.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18863069",
        "wgs_master": "JAGUCN000000000.1",
        "refseq_category": "reference genome",
        "taxid": "1166478",
        "species_taxid": "1166478",
        "organism_name": "Carboxylicivirga mesophila",
        "infraspecific_name": "strain=JCM 18290",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/04",
        "asm_name": "ASM1827197v1",
        "asm_submitter": "Shandong University at Weihai",
        "gbrs_paired_asm": "GCA_018271975.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/271/975/GCF_018271975.1_ASM1827197v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5650892",
        "genome_size_ungapped": "5650892",
        "gc_percent": "41.000000",
        "replicon_count": "0",
        "scaffold_count": "87",
        "contig_count": "87",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_018271975.1-RS_2024_04_26",
        "annotation_date": "2024-04-26",
        "total_gene_count": "4375",
        "protein_coding_gene_count": "4300",
        "non_coding_gene_count": "64",
        "pubmed_id": "24436065"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-04",
    "dateModified": "2021-05-04",
    "datePublished": "2021-05-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Carboxylicivirga mesophila"
        ],
        "sample_taxid": [
            "1166478"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Daebudo-Island"
        ],
        "sample_host_location_id": [],
        "data_size": "1.612 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5650892",
        "Number of Sequences": "87",
        "Longest Sequences (bp)": "522483",
        "N50 (bp)": "181737",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.2",
        "Number of CDSs": "4283",
        "Average Protein Length": "386.9",
        "Coding Ratio (%)": "88.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Carboxylicivirga mesophila",
                "strain": "strain=JCM 18290",
                "accession": "GCA_018271975.1",
                "taxid": 1166478,
                "species_taxid": 1166478,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1841,
                "total_fragments": 1845,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Carboxylicivirga sediminis",
                "strain": "strain=JR1",
                "accession": "GCA_018156225.1",
                "taxid": 2006564,
                "species_taxid": 2006564,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.3497,
                "matched_fragments": 1589,
                "total_fragments": 1845,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Carboxylicivirga marina",
                "strain": "strain=N1Y132",
                "accession": "GCA_016612505.1",
                "taxid": 2800988,
                "species_taxid": 2800988,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1827,
                "matched_fragments": 534,
                "total_fragments": 1845,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Carboxylicivirga linearis",
                "strain": "strain=FB218",
                "accession": "GCA_018271995.1",
                "taxid": 1628157,
                "species_taxid": 1628157,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4522,
                "matched_fragments": 224,
                "total_fragments": 1845,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Labilibacter marinus",
                "strain": "strain=Y11",
                "accession": "GCA_001659685.2",
                "taxid": 1477105,
                "species_taxid": 1477105,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5325,
                "matched_fragments": 79,
                "total_fragments": 1845,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharicrinis aurantiacus",
                "strain": "strain=HQYD1",
                "accession": "GCA_001660705.2",
                "taxid": 1849719,
                "species_taxid": 1849719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9474,
                "matched_fragments": 76,
                "total_fragments": 1845,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharicrinis carchari",
                "strain": "strain=DSM 27040",
                "accession": "GCA_900182605.1",
                "taxid": 1168039,
                "species_taxid": 1168039,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8598,
                "matched_fragments": 63,
                "total_fragments": 1845,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinifilum breve",
                "strain": "strain=JC075",
                "accession": "GCA_003202155.1",
                "taxid": 2184082,
                "species_taxid": 2184082,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7893,
                "matched_fragments": 64,
                "total_fragments": 1845,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_018271975.1",
                "gtdb_species": "s__Carboxylicivirga mesophila",
                "ani": 100.0,
                "matched_fragments": 1841,
                "total_fragments": 1845,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Carboxylicivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_018156225.1",
                "gtdb_species": "s__Carboxylicivirga sediminis",
                "ani": 93.3497,
                "matched_fragments": 1589,
                "total_fragments": 1845,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Carboxylicivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016612505.1",
                "gtdb_species": "s__Carboxylicivirga sp016612505",
                "ani": 79.2089,
                "matched_fragments": 532,
                "total_fragments": 1845,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Carboxylicivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007097485.1",
                "gtdb_species": "s__Carboxylicivirga sp007097485",
                "ani": 78.4653,
                "matched_fragments": 462,
                "total_fragments": 1845,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Carboxylicivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002429115.1",
                "gtdb_species": "s__Carboxylicivirga sp002429115",
                "ani": 78.4457,
                "matched_fragments": 351,
                "total_fragments": 1845,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Carboxylicivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018271995.1",
                "gtdb_species": "s__Carboxylicivirga linearis",
                "ani": 77.4665,
                "matched_fragments": 224,
                "total_fragments": 1845,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Carboxylicivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005877885.1",
                "gtdb_species": "s__Saccharicrinis sediminis",
                "ani": 76.2644,
                "matched_fragments": 120,
                "total_fragments": 1845,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Saccharicrinis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Carboxylicivirga",
        "mesophila"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}