{
    "type": "genome",
    "identifier": "GCF_018304665.1",
    "organism": "Chloracidobacterium thermophilum",
    "title": "Chloracidobacterium thermophilum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Tokyo Metropolitan University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_018304665.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18499028",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "458033",
        "species_taxid": "458033",
        "organism_name": "Chloracidobacterium thermophilum",
        "infraspecific_name": "strain=B",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/07",
        "asm_name": "ASM1830466v1",
        "asm_submitter": "Tokyo Metropolitan University",
        "gbrs_paired_asm": "GCA_018304665.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/304/665/GCF_018304665.1_ASM1830466v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3756354",
        "genome_size_ungapped": "3756354",
        "gc_percent": "61.500000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_018304665.1-RS_2024_05_21",
        "annotation_date": "2024-05-21",
        "total_gene_count": "3273",
        "protein_coding_gene_count": "3108",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-07",
    "dateModified": "2021-05-07",
    "datePublished": "2021-05-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Chloracidobacterium thermophilum"
        ],
        "sample_taxid": [
            "458033"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Octopus Spring, Yellowstone National Park, Wyoming"
        ],
        "sample_host_location_id": [],
        "data_size": "1.036 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 92.76,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3756354",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "2704697",
        "N50 (bp)": "2704697",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.3",
        "Number of CDSs": "3235",
        "Average Protein Length": "346.2",
        "Coding Ratio (%)": "89.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Chloracidobacterium thermophilum",
                "strain": "strain=B",
                "accession": "GCA_018304665.1",
                "taxid": 458033,
                "species_taxid": 458033,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1250,
                "total_fragments": 1251,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Chloracidobacterium thermophilum",
                "strain": "strain=B",
                "accession": "GCA_000226295.1",
                "taxid": 458033,
                "species_taxid": 458033,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9833,
                "matched_fragments": 1229,
                "total_fragments": 1251,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 92.76,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000226295.1",
                "gtdb_species": "s__Chloracidobacterium thermophilum",
                "ani": 99.9833,
                "matched_fragments": 1229,
                "total_fragments": 1251,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Chloracidobacteriales;f__Chloracidobacteriaceae;g__Chloracidobacterium",
                "ani_circumscription_radius": 95.2206,
                "mean_intra_species_ani": "99.33",
                "min_intra_species_ani": "98.67",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_018304765.1",
                "gtdb_species": "s__Chloracidobacterium aggregatum",
                "ani": 95.1826,
                "matched_fragments": 1156,
                "total_fragments": 1251,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Chloracidobacteriales;f__Chloracidobacteriaceae;g__Chloracidobacterium",
                "ani_circumscription_radius": 95.2206,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "95.69",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_002254845.1",
                "gtdb_species": "s__Chloracidobacterium sp002254845",
                "ani": 78.2531,
                "matched_fragments": 538,
                "total_fragments": 1251,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Chloracidobacteriales;f__Chloracidobacteriaceae;g__Chloracidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018304825.1",
                "gtdb_species": "s__Chloracidobacterium validum",
                "ani": 78.0337,
                "matched_fragments": 591,
                "total_fragments": 1251,
                "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Chloracidobacteriales;f__Chloracidobacteriaceae;g__Chloracidobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 42.0,
        "optimum_tmp": 52.0,
        "optimum_ph": 7.0,
        "genome_size": 3676368.8,
        "gc_content": 61.345,
        "coding_genes": 2976.0,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 46.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Chloracidobacterium",
        "thermophilum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}