{
    "type": "genome",
    "identifier": "GCF_018305205.1",
    "organism": "Turicibacter bilis",
    "title": "Turicibacter bilis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "USDA ARS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_018305205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14858380",
        "wgs_master": "JABTTG000000000.1",
        "refseq_category": "na",
        "taxid": "2735723",
        "species_taxid": "2735723",
        "organism_name": "Turicibacter bilis",
        "infraspecific_name": "strain=MMM721",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/07",
        "asm_name": "ASM1830520v1",
        "asm_submitter": "USDA ARS",
        "gbrs_paired_asm": "GCA_018305205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/305/205/GCF_018305205.1_ASM1830520v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2714640",
        "genome_size_ungapped": "2714270",
        "gc_percent": "34.500000",
        "replicon_count": "0",
        "scaffold_count": "93",
        "contig_count": "93",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_018305205.1-RS_2024_03_13",
        "annotation_date": "2024-03-13",
        "total_gene_count": "2612",
        "protein_coding_gene_count": "2459",
        "non_coding_gene_count": "113",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-07",
    "dateModified": "2021-05-07",
    "datePublished": "2021-05-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Turicibacter bilis"
        ],
        "sample_taxid": [
            "2735723"
        ],
        "sample_host_organism": [
            "Gallus gallus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Ames"
        ],
        "sample_host_location_id": [],
        "data_size": "0.764 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2714640",
        "Number of Sequences": "93",
        "Longest Sequences (bp)": "169236",
        "N50 (bp)": "85958",
        "Gap Ratio (%)": "0.013630",
        "GCcontent (%)": "34.4",
        "Number of CDSs": "2540",
        "Average Protein Length": "289.1",
        "Coding Ratio (%)": "81.1",
        "Number of rRNAs": "5",
        "Number of tRNAs": "97",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Turicibacter bilis",
                "strain": "strain=MMM721",
                "accession": "GCA_018305205.1",
                "taxid": 2735723,
                "species_taxid": 2735723,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 864,
                "total_fragments": 868,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Turicibacter bilis",
                "strain": "strain=MMM721",
                "accession": "GCA_024499055.1",
                "taxid": 2735723,
                "species_taxid": 2735723,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9953,
                "matched_fragments": 868,
                "total_fragments": 868,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Turicibacter sanguinis",
                "strain": "strain=MOL361",
                "accession": "GCA_013046825.1",
                "taxid": 154288,
                "species_taxid": 154288,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.967,
                "matched_fragments": 431,
                "total_fragments": 868,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001543345.1",
                "gtdb_species": "s__Turicibacter sp001543345",
                "ani": 97.9261,
                "matched_fragments": 751,
                "total_fragments": 868,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Haloplasmatales_A;f__Turicibacteraceae;g__Turicibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "97.82",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 10,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017888305.1",
                "gtdb_species": "s__Turicibacter sp017888305",
                "ani": 83.4591,
                "matched_fragments": 394,
                "total_fragments": 868,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Haloplasmatales_A;f__Turicibacteraceae;g__Turicibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013046825.1",
                "gtdb_species": "s__Turicibacter sanguinis",
                "ani": 80.9605,
                "matched_fragments": 433,
                "total_fragments": 868,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Haloplasmatales_A;f__Turicibacteraceae;g__Turicibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.52",
                "min_intra_species_ani": "99.21",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 18,
                "status": "-"
            },
            {
                "accession": "GCF_009935875.1",
                "gtdb_species": "s__Turicibacter sp002311155",
                "ani": 80.1959,
                "matched_fragments": 320,
                "total_fragments": 868,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Haloplasmatales_A;f__Turicibacteraceae;g__Turicibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.25",
                "min_intra_species_ani": "99.25",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002493395.1",
                "gtdb_species": "s__Turicibacter sp002493395",
                "ani": 80.112,
                "matched_fragments": 285,
                "total_fragments": 868,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Haloplasmatales_A;f__Turicibacteraceae;g__Turicibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003486705.1",
                "gtdb_species": "s__Turicibacter sp003486705",
                "ani": 78.3727,
                "matched_fragments": 175,
                "total_fragments": 868,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Haloplasmatales_A;f__Turicibacteraceae;g__Turicibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.5,
        "genome_size": 2953411.0,
        "gc_content": 34.1,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Turicibacter",
        "bilis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}