{ "type": "genome", "identifier": "GCF_018316655.1", "organism": "Nocardiopsis changdeensis", "title": "Nocardiopsis changdeensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hunan University of Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018316655.1", "bioproject": "PRJNA224116", "biosample": "SAMN18993028", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2831969", "species_taxid": "2831969", "organism_name": "Nocardiopsis changdeensis", "infraspecific_name": "strain=Mg02", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/10", "asm_name": "ASM1831665v1", "asm_submitter": "Hunan University of Science and Technology", "gbrs_paired_asm": "GCA_018316655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/316/655/GCF_018316655.1_ASM1831665v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7395646", "genome_size_ungapped": "7395646", "gc_percent": "73.500000", "replicon_count": "4", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018316655.1-RS_2024_04_01", "annotation_date": "2024-04-01", "total_gene_count": "6674", "protein_coding_gene_count": "6538", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-10", "dateModified": "2021-05-10", "datePublished": "2021-05-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardiopsis changdeensis" ], "sample_taxid": [ "2831969" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xiangtan City" ], "sample_host_location_id": [], "data_size": "1.950 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7395646", "Number of Sequences": "4", "Longest Sequences (bp)": "7194689", "N50 (bp)": "7194689", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.5", "Number of CDSs": "6757", "Average Protein Length": "318.0", "Coding Ratio (%)": "87.2", "Number of rRNAs": "10", "Number of tRNAs": "76", "Number of CRISPRs": "18" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardiopsis flavescens", "strain": "strain=CGMCC 4.5723", "accession": "GCA_900141985.1", "taxid": 758803, "species_taxid": 758803, "relation_to_type": "type", "validated": true, "ani": 90.1036, "matched_fragments": 1829, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei", "strain": "strain=ATCC 23218", "accession": "GCA_012396345.1", "taxid": 2014, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 84.1239, "matched_fragments": 1429, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei subsp. dassonvillei", "strain": "strain=DSM 43111", "accession": "GCA_000092985.1", "taxid": 568208, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 84.1154, "matched_fragments": 1513, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei", "strain": "strain=NCTC10488", "accession": "GCA_900638215.1", "taxid": 2014, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 84.0986, "matched_fragments": 1512, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis alborubida", "strain": "strain=NBRC 13392", "accession": "GCA_001552695.1", "taxid": 146802, "species_taxid": 146802, "relation_to_type": "type", "validated": true, "ani": 83.9882, "matched_fragments": 1450, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis alborubida", "strain": "strain=ATCC 23612", "accession": "GCA_012396365.1", "taxid": 146802, "species_taxid": 146802, "relation_to_type": "type", "validated": true, "ani": 83.937, "matched_fragments": 1488, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis algeriensis", "strain": "strain=CECT 8712", "accession": "GCA_014203695.1", "taxid": 1478215, "species_taxid": 1478215, "relation_to_type": "type", "validated": true, "ani": 83.8934, "matched_fragments": 1208, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis sinuspersici", "strain": "strain=UTMC 00102", "accession": "GCA_001998325.1", "taxid": 501010, "species_taxid": 501010, "relation_to_type": "type", "validated": true, "ani": 83.8451, "matched_fragments": 1398, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis halotolerans", "strain": "strain=DSM 44410", "accession": "GCA_000341065.1", "taxid": 124252, "species_taxid": 124252, "relation_to_type": "type", "validated": true, "ani": 83.5955, "matched_fragments": 1288, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis aegyptia", "strain": "strain=DSM 44442", "accession": "GCA_013410755.1", "taxid": 220378, "species_taxid": 220378, "relation_to_type": "type", "validated": true, "ani": 82.9529, "matched_fragments": 1418, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis metallicus", "strain": "strain=DSM 44598", "accession": "GCA_014201115.1", "taxid": 179819, "species_taxid": 179819, "relation_to_type": "type", "validated": true, "ani": 82.9057, "matched_fragments": 1423, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis terrae", "strain": "strain=DSM 45157", "accession": "GCA_014874035.1", "taxid": 372655, "species_taxid": 372655, "relation_to_type": "type", "validated": true, "ani": 82.8528, "matched_fragments": 1342, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis exhalans", "strain": "strain=JCM11759T", "accession": "GCA_024134545.1", "taxid": 163604, "species_taxid": 163604, "relation_to_type": "type", "validated": true, "ani": 82.7457, "matched_fragments": 1410, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis terrae", "strain": "strain=KCTC 19431", "accession": "GCA_014651695.1", "taxid": 372655, "species_taxid": 372655, "relation_to_type": "type", "validated": true, "ani": 82.6856, "matched_fragments": 1346, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis prasina", "strain": "strain=DSM 43845", "accession": "GCA_000341265.1", "taxid": 2015, "species_taxid": 2015, "relation_to_type": "type", "validated": true, "ani": 82.6648, "matched_fragments": 1254, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis lucentensis", "strain": "strain=DSM 44048", "accession": "GCA_000341125.1", "taxid": 53441, "species_taxid": 53441, "relation_to_type": "type", "validated": true, "ani": 82.4526, "matched_fragments": 1058, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis coralli", "strain": "strain=HNM0947", "accession": "GCA_014892575.1", "taxid": 2772213, "species_taxid": 2772213, "relation_to_type": "type", "validated": true, "ani": 81.9195, "matched_fragments": 1176, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis kunsanensis", "strain": "strain=DSM 44524", "accession": "GCA_000340965.1", "taxid": 141693, "species_taxid": 141693, "relation_to_type": "type", "validated": true, "ani": 81.3853, "matched_fragments": 1001, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis mwathae", "strain": "strain=DSM 46659", "accession": "GCA_014201195.1", "taxid": 1472723, "species_taxid": 1472723, "relation_to_type": "type", "validated": true, "ani": 80.1754, "matched_fragments": 959, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis potens", "strain": "strain=DSM 45234", "accession": "GCA_000341105.1", 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