{
    "type": "genome",
    "identifier": "GCF_018323885.1",
    "organism": "Citrobacter amalonaticus",
    "title": "Citrobacter amalonaticus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "RIKEN, BDR",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_018323885.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00294600",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "35703",
        "species_taxid": "35703",
        "organism_name": "Citrobacter amalonaticus",
        "infraspecific_name": "strain=JCM 1661",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/22",
        "asm_name": "ASM1832388v1",
        "asm_submitter": "RIKEN, BDR",
        "gbrs_paired_asm": "GCA_018323885.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/323/885/GCF_018323885.1_ASM1832388v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5073658",
        "genome_size_ungapped": "5073658",
        "gc_percent": "53.500000",
        "replicon_count": "4",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_018323885.1-RS_2024_05_21",
        "annotation_date": "2024-05-21",
        "total_gene_count": "4880",
        "protein_coding_gene_count": "4678",
        "non_coding_gene_count": "114",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-22",
    "dateModified": "2021-04-22",
    "datePublished": "2021-04-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Citrobacter amalonaticus"
        ],
        "sample_taxid": [
            "35703"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.439 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5073658",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "4717872",
        "N50 (bp)": "4717872",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.4",
        "Number of CDSs": "4748",
        "Average Protein Length": "313.1",
        "Coding Ratio (%)": "87.9",
        "Number of rRNAs": "22",
        "Number of tRNAs": "86",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "accession": "GCA_018323885.1",
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                "relation_to_type": "type",
                "validated": true,
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            },
            {
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Citrobacter farmeri",
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                "species_taxid": 67824,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "organism_name": "Citrobacter rodentium",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salmonella enterica subsp. enterica",
                "strain": "strain=PartC-Senterica-RM8376",
                "accession": "GCA_022869965.1",
                "taxid": 59201,
                "species_taxid": 28901,
                "relation_to_type": "suspected-type",
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                "ani": 82.9667,
                "matched_fragments": 957,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter roggenkampii",
                "strain": "strain=DSM 16690",
                "accession": "GCA_024390995.1",
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                "species_taxid": 1812935,
                "relation_to_type": "type",
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                "ani": 82.0098,
                "matched_fragments": 894,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter sichuanensis",
                "strain": "strain=WCHECL1597",
                "accession": "GCA_025002605.1",
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                "species_taxid": 2071710,
                "relation_to_type": "type",
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                "ani": 81.8637,
                "matched_fragments": 915,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter wuhouensis",
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                "accession": "GCA_004331265.1",
                "taxid": 2529381,
                "species_taxid": 2529381,
                "relation_to_type": "type",
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                "matched_fragments": 881,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klebsiella oxytoca",
                "strain": "strain=NBRC 105695",
                "accession": "GCA_001598695.1",
                "taxid": 571,
                "species_taxid": 571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0977,
                "matched_fragments": 853,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klebsiella oxytoca",
                "strain": "strain=DSM 5175",
                "accession": "GCA_020115535.1",
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                "species_taxid": 571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.047,
                "matched_fragments": 854,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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        "gtdb_result": [
            {
                "accession": "GCF_018323885.1",
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                "matched_fragments": 1686,
                "total_fragments": 1689,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter_A",
                "ani_circumscription_radius": 95.0,
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                "status": "conclusive"
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            {
                "accession": "GCF_018252635.1",
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            {
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}