{ "type": "genome", "identifier": "GCF_018324105.1", "organism": "Acinetobacter bouvetii", "title": "Acinetobacter bouvetii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "RIKEN, BDR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018324105.1", "bioproject": "PRJNA224116", "biosample": "SAMD00294604", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "202951", "species_taxid": "202951", "organism_name": "Acinetobacter bouvetii", "infraspecific_name": "strain=JCM 18991", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/22", "asm_name": "ASM1832410v1", "asm_submitter": "RIKEN, BDR", "gbrs_paired_asm": "GCA_018324105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/324/105/GCF_018324105.1_ASM1832410v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3399245", "genome_size_ungapped": "3399245", "gc_percent": "45.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018324105.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3221", "protein_coding_gene_count": "3062", "non_coding_gene_count": "112", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-22", "dateModified": "2021-04-22", "datePublished": "2021-04-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter bouvetii" ], "sample_taxid": [ "202951" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.955 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3399245", "Number of Sequences": "1", "Longest Sequences (bp)": "3399245", "N50 (bp)": "3399245", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.0", "Number of CDSs": "3102", "Average Protein Length": "308.9", "Coding Ratio (%)": "84.6", "Number of rRNAs": "21", "Number of tRNAs": "87", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter bouvetii", "strain": "strain=DSM 14964", "accession": "GCA_000373725.1", "taxid": 202951, "species_taxid": 202951, "relation_to_type": "type", "validated": true, "ani": 99.9839, "matched_fragments": 1107, "total_fragments": 1133, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter bouvetii", "strain": "strain=CIP 107468", "accession": "GCA_000368865.1", "taxid": 202951, "species_taxid": 202951, "relation_to_type": "type", "validated": true, "ani": 99.9821, "matched_fragments": 1122, "total_fragments": 1133, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter pragensis", "strain": "strain=ANC 4149", "accession": "GCA_001605895.1", "taxid": 1806892, "species_taxid": 1806892, "relation_to_type": "type", "validated": true, "ani": 85.6172, "matched_fragments": 855, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tianfuensis", "strain": "strain=WCHAc060012", "accession": "GCA_003611465.1", "taxid": 2419603, "species_taxid": 2419603, "relation_to_type": "type", "validated": true, "ani": 81.5334, "matched_fragments": 648, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter celticus", "strain": "strain=ANC 4603", "accession": "GCA_001707755.1", "taxid": 1891224, "species_taxid": 1891224, "relation_to_type": "type", "validated": true, "ani": 81.4985, "matched_fragments": 603, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=FDAARGOS_910", "accession": "GCA_016027055.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 81.443, "matched_fragments": 486, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 81.3744, "matched_fragments": 501, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=DSM 6963", "accession": "GCA_000949655.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 81.1058, "matched_fragments": 475, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter cumulans", "strain": "strain=WCHAc060092", "accession": "GCA_003024525.3", "taxid": 2136182, "species_taxid": 2136182, "relation_to_type": "type", "validated": true, "ani": 81.0807, "matched_fragments": 575, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter chengduensis", "strain": "strain=WCHAc060005", "accession": "GCA_003664645.1", "taxid": 2420890, "species_taxid": 2420890, "relation_to_type": "type", "validated": true, "ani": 80.7637, "matched_fragments": 561, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=ANC 4275", "accession": "GCA_001678755.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 80.6405, "matched_fragments": 518, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pseudolwoffii", "strain": "strain=ANC 5044", "accession": "GCA_002803605.1", "taxid": 2053287, "species_taxid": 2053287, "relation_to_type": "type", "validated": true, "ani": 80.3105, "matched_fragments": 459, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter indicus", "strain": "strain=CIP 110367", "accession": "GCA_000488255.1", "taxid": 756892, "species_taxid": 756892, "relation_to_type": "type", "validated": true, "ani": 80.2177, "matched_fragments": 479, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter indicus", "strain": "strain=DSM 25388", "accession": "GCA_000830155.1", "taxid": 756892, "species_taxid": 756892, "relation_to_type": "type", "validated": true, "ani": 79.951, "matched_fragments": 455, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 79.8798, "matched_fragments": 458, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 79.601, "matched_fragments": 352, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 79.1708, "matched_fragments": 289, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter ihumii", "strain": "strain=Marseille-P8049", "accession": "GCA_900625095.1", "taxid": 2483802, "species_taxid": 2483802, "relation_to_type": "type", "validated": true, "ani": 78.347, "matched_fragments": 310, "total_fragments": 1133, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000368865.1", "gtdb_species": "s__Acinetobacter bouvetii", "ani": 99.9821, "matched_fragments": 1122, "total_fragments": 1133, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.30", "min_intra_species_ani": "95.72", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.92", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCF_001605895.1", "gtdb_species": "s__Acinetobacter pragensis", "ani": 85.6066, "matched_fragments": 856, "total_fragments": 1133, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002135435.1", "gtdb_species": "s__Acinetobacter sp002135435", "ani": 84.103, "matched_fragments": 863, "total_fragments": 1133, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001696615.3", "gtdb_species": "s__Acinetobacter sp001696615", "ani": 82.3706, "matched_fragments": 718, "total_fragments": 1133, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003611465.1", "gtdb_species": "s__Acinetobacter tianfuensis", "ani": 81.5445, "matched_fragments": 647, "total_fragments": 1133, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { 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"s__Acinetobacter sp004331285", "ani": 79.841, "matched_fragments": 503, "total_fragments": 1133, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.019, "cell_length": 0.052, "doubling_h": -0.144, "growth_tmp": 30.0, "optimum_tmp": 29.638, "optimum_ph": 7.1, "genome_size": 3357539.333, "gc_content": 45.0, "coding_genes": 3356.54, "rRNA16S_genes": 6.191, "tRNA_genes": 76.716, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, 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