{ "type": "genome", "identifier": "GCF_018324255.1", "organism": "Polymorphospora rubra", "title": "Polymorphospora rubra", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018324255.1", "bioproject": "PRJNA224116", "biosample": "SAMD00219692", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "338584", "species_taxid": "338584", "organism_name": "Polymorphospora rubra", "infraspecific_name": "strain=NBRC 101157", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/01", "asm_name": "ASM1832425v1", "asm_submitter": "Biological Resource Center, National Institute of Technology and Evaluation (NBRC)", "gbrs_paired_asm": "GCA_018324255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/324/255/GCF_018324255.1_ASM1832425v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8365212", "genome_size_ungapped": "8365212", "gc_percent": "72.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018324255.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "7350", "protein_coding_gene_count": "6960", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-01", "dateModified": "2021-04-01", "datePublished": "2021-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Polymorphospora rubra" ], "sample_taxid": [ "338584" ], "sample_host_organism": [ "Bruguiera gymnorhiza" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Okinawa, Iriomote Island" ], "sample_host_location_id": [], "data_size": "2.210 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8365212", "Number of Sequences": "1", "Longest Sequences (bp)": "8365212", "N50 (bp)": "8365212", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.8", "Number of CDSs": "7477", "Average Protein Length": "333.2", "Coding Ratio (%)": "89.3", "Number of rRNAs": "9", "Number of tRNAs": "77", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora echinofusca", "strain": "strain=DSM 43913", "accession": "GCA_900091445.1", "taxid": 47858, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora polyrhachis", "strain": "strain=DSM 45886", "accession": "GCA_014203835.1", "taxid": 1282883, "species_taxid": 1282883, "relation_to_type": "type", "validated": true, "ani": 80.7479, "matched_fragments": 1077, "total_fragments": 2788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 80.7293, "matched_fragments": 1068, "total_fragments": 2788, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora fulviviridis", "strain": "strain=JCM 3259", "accession": "GCA_014648395.1", "taxid": 47860, "species_taxid": 47860, "relation_to_type": "type", "validated": true, "ani": 80.7198, "matched_fragments": 1267, "total_fragments": 2788, "ani_threshold": 95, "status": 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