{ "type": "genome", "identifier": "GCF_018332455.1", "organism": "Clostridium polyendosporum", "title": "Clostridium polyendosporum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Livestock and Grassland Science, NARO", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018332455.1", "bioproject": "PRJNA224116", "biosample": "SAMD00283800", "wgs_master": "BOPZ00000000.1", "refseq_category": "reference genome", "taxid": "69208", "species_taxid": "69208", "organism_name": "Clostridium polyendosporum", "infraspecific_name": "strain=JCM 30710", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/10", "asm_name": "ASM1833245v1", "asm_submitter": "Institute of Livestock and Grassland Science, NARO", "gbrs_paired_asm": "GCA_018332455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/332/455/GCF_018332455.1_ASM1833245v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3735488", "genome_size_ungapped": "3734866", "gc_percent": "31.000000", "replicon_count": "0", "scaffold_count": "136", "contig_count": "136", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018332455.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3581", "protein_coding_gene_count": "3347", "non_coding_gene_count": "170", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-10", "dateModified": "2021-03-10", "datePublished": "2021-03-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridium polyendosporum" ], "sample_taxid": [ "69208" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Myanmar" ], "sample_host_location_id": [], "data_size": "1.030 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3735488", "Number of Sequences": "136", "Longest Sequences (bp)": "256863", "N50 (bp)": "95442", "Gap Ratio (%)": "0.016651", "GCcontent (%)": "30.9", "Number of CDSs": "3396", "Average Protein Length": "295.3", "Coding Ratio (%)": "80.5", "Number of rRNAs": "1", "Number of tRNAs": "95", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium polyendosporum", "strain": "strain=JCM 30710", "accession": "GCA_018332455.1", "taxid": 69208, "species_taxid": 69208, 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"GCA_900626095.1", "taxid": 2040295, "species_taxid": 2040295, "relation_to_type": "type", "validated": true, "ani": 76.1536, "matched_fragments": 100, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium felsineum", "strain": "strain=DSM 794", "accession": "GCA_002006355.2", "taxid": 36839, "species_taxid": 36839, "relation_to_type": "type", "validated": true, "ani": 75.9838, "matched_fragments": 118, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium felsineum", "strain": "strain=DSM 793", "accession": "GCA_002006235.2", "taxid": 36839, "species_taxid": 36839, "relation_to_type": "type", "validated": true, "ani": 75.8796, "matched_fragments": 118, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium felsineum", "strain": "strain=DSM 7320", "accession": "GCA_002006215.2", "taxid": 36839, "species_taxid": 36839, 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