{ "type": "genome", "identifier": "GCF_018332515.1", "organism": "Bacillus hominis", "title": "Bacillus hominis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Department of Microbiology, Juntendo University School of Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018332515.1", "bioproject": "PRJNA224116", "biosample": "SAMD00286807", "wgs_master": "BOQD00000000.1", "refseq_category": "na", "taxid": "2817478", "species_taxid": "2817478", "organism_name": "Bacillus hominis", "infraspecific_name": "strain=BML-BC059", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/14", "asm_name": "ASM1833251v1", "asm_submitter": "Department of Microbiology, Juntendo University School of Medicine", "gbrs_paired_asm": "GCA_018332515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/332/515/GCF_018332515.1_ASM1833251v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5245703", "genome_size_ungapped": "5245703", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "714", "contig_count": "714", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018332515.1-RS_2024_08_03", "annotation_date": "2024-08-03", "total_gene_count": "5631", "protein_coding_gene_count": "5243", "non_coding_gene_count": "93", "pubmed_id": "34494947" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-14", "dateModified": "2021-03-14", "datePublished": "2021-03-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacillus hominis" ], "sample_taxid": [ "2817478" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Saitama, Kawagoe" ], "sample_host_location_id": [], "data_size": "1.489 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5245173", "Number of Sequences": "711", "Longest Sequences (bp)": "104771", "N50 (bp)": "19494", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.5", "Number of CDSs": "5102", "Average Protein Length": "272.3", "Coding Ratio (%)": "79.5", "Number of rRNAs": "7", "Number of tRNAs": "77", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bacillus mycoides", "strain": "strain=DSM 2048", "accession": "GCA_022630575.1", "taxid": 1405, "species_taxid": 1405, "relation_to_type": "type", "validated": true, "ani": 93.8291, "matched_fragments": 1248, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus mycoides", "strain": "strain=ATCC 6462", "accession": "GCA_000832605.1", "taxid": 1405, "species_taxid": 1405, "relation_to_type": "type", "validated": true, "ani": 93.7978, "matched_fragments": 1234, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus mycoides", "strain": "strain=DSM 2048", "accession": "GCA_000003925.1", "taxid": 1405, "species_taxid": 1405, "relation_to_type": "type", "validated": true, "ani": 93.7185, "matched_fragments": 1236, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus proteolyticus", "strain": "strain=TD42", "accession": "GCA_001884065.1", "taxid": 2026192, "species_taxid": 2026192, "relation_to_type": "type", "validated": true, "ani": 93.1477, "matched_fragments": 1254, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus nitratireducens", "strain": "strain=4049", "accession": "GCA_001884135.1", "taxid": 2026193, "species_taxid": 2026193, "relation_to_type": "type", "validated": true, "ani": 92.891, "matched_fragments": 1242, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus toyonensis", "strain": "strain=BCT-7112", "accession": "GCA_000496285.1", "taxid": 155322, "species_taxid": 155322, "relation_to_type": "type", "validated": true, "ani": 90.7185, "matched_fragments": 1186, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus luti", "strain": "strain=TD41", "accession": "GCA_001884105.1", "taxid": 2026191, "species_taxid": 2026191, "relation_to_type": "type", "validated": true, "ani": 90.2933, "matched_fragments": 1210, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus sanguinis", "strain": "strain=BML-BC004", "accession": "GCA_018332475.1", "taxid": 2817476, "species_taxid": 2817476, "relation_to_type": "type", "validated": true, "ani": 90.0544, "matched_fragments": 1151, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus pacificus", "strain": "strain=EB422", "accession": "GCA_001884025.1", "taxid": 2026187, "species_taxid": 2026187, "relation_to_type": "type", "validated": true, "ani": 89.8485, "matched_fragments": 1235, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus thuringiensis", "strain": "strain=ATCC 10792", "accession": "GCA_000161615.1", "taxid": 1428, "species_taxid": 1428, "relation_to_type": "suspected-type", "validated": true, "ani": 89.6823, "matched_fragments": 1256, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus thuringiensis", "strain": "strain=ATCC 10792", "accession": "GCA_002119445.1", "taxid": 1428, "species_taxid": 1428, "relation_to_type": "suspected-type", "validated": true, "ani": 89.623, "matched_fragments": 1236, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus anthracis", "strain": "strain=Vollum", "accession": "GCA_022221345.1", "taxid": 1392, "species_taxid": 1392, "relation_to_type": "type", "validated": true, "ani": 89.4432, "matched_fragments": 1222, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus anthracis", "strain": "strain=Vollum", "accession": "GCA_000167275.1", "taxid": 1392, "species_taxid": 1392, "relation_to_type": "type", "validated": true, "ani": 89.3971, "matched_fragments": 1216, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus kexueae", "strain": "strain=KCTC 33881", "accession": "GCA_022809095.1", "taxid": 2078952, "species_taxid": 2078952, "relation_to_type": "type", "validated": true, "ani": 76.7005, "matched_fragments": 79, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychrobacillus faecigallinarum", "strain": "strain=Sa2BUA9", "accession": "GCA_014836595.1", "taxid": 2762235, "species_taxid": 2762235, "relation_to_type": "type", "validated": true, "ani": 76.6086, "matched_fragments": 50, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anoxybacillus kestanbolensis", "strain": "strain=NCIMB 13971", "accession": "GCA_023653015.1", "taxid": 227476, "species_taxid": 227476, "relation_to_type": "type", "validated": true, "ani": 76.3298, "matched_fragments": 64, "total_fragments": 1478, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000291355.1", "gtdb_species": "s__Bacillus_A cereus_O", "ani": 96.8183, "matched_fragments": 1233, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.56", "min_intra_species_ani": "96.56", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_018742245.1", "gtdb_species": "s__Bacillus_A cereus_U", "ani": 94.2919, "matched_fragments": 1251, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.53", "min_intra_species_ani": "95.81", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 34, "status": "-" }, { "accession": "GCF_015071065.1", "gtdb_species": "s__Bacillus_A cereus_BA", "ani": 94.0628, "matched_fragments": 1240, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.35", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001757995.1", "gtdb_species": "s__Bacillus_A mycoides_B", "ani": 94.0374, "matched_fragments": 1232, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.86", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_007673305.1", "gtdb_species": "s__Bacillus_A mycoides_C", "ani": 93.9597, "matched_fragments": 1187, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.83", "min_intra_species_ani": "95.78", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.81", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002975175.1", "gtdb_species": "s__Bacillus_A sp002975175", "ani": 93.9321, "matched_fragments": 1228, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000832605.1", "gtdb_species": "s__Bacillus_A mycoides", "ani": 93.8135, "matched_fragments": 1233, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.01", "min_intra_species_ani": "96.59", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.83", "num_clustered_genomes": 125, "status": "-" }, { "accession": "GCA_018966865.1", "gtdb_species": "s__Bacillus_A sp018966865", "ani": 93.7569, "matched_fragments": 1254, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.14", "min_intra_species_ani": "96.14", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002574955.1", "gtdb_species": "s__Bacillus_A cereus_AT", "ani": 93.1125, "matched_fragments": 1253, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.1182, "mean_intra_species_ani": "99.26", "min_intra_species_ani": "96.80", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.81", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_002564555.1", "gtdb_species": "s__Bacillus_A cereus_K", "ani": 91.0047, "matched_fragments": 1173, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.77", "min_intra_species_ani": "97.26", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_002584985.1", "gtdb_species": "s__Bacillus_A sp002584985", "ani": 90.5867, "matched_fragments": 1173, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "99.41", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_001583695.1", "gtdb_species": "s__Bacillus_A wiedmannii", "ani": 90.2256, "matched_fragments": 1179, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.52", "min_intra_species_ani": "95.09", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 225, "status": "-" }, { "accession": "GCF_014932895.1", "gtdb_species": "s__Bacillus_A thuringiensis_AA", "ani": 90.1893, "matched_fragments": 1197, "total_fragments": 1478, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.176, "cell_length": 0.387, "doubling_h": -0.134, "growth_tmp": 31.412, "optimum_tmp": 33.64, "optimum_ph": 7.746, "genome_size": 4544138.117, "gc_content": 40.577, "coding_genes": 4334.002, "rRNA16S_genes": 9.859, "tRNA_genes": 88.223, "gram_stain": 0.993, "sporulation": 0.975, "motility": 0.841, "range_salinity": 0.6, "facultative_respiration": 0.16, "anaerobic_respiration": 0.011, "aerobic_respiration": 0.827, "mesophilic_range_tmp": 0.928, "thermophilic_range_tmp": 0.053, "psychrophilic_range_tmp": 0.017, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Bacillus", "hominis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }