{ "type": "genome", "identifier": "GCF_018343545.2", "organism": "Neobacillus citreus", "title": "Neobacillus citreus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Fujian Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018343545.2", "bioproject": "PRJNA224116", "biosample": "SAMN19008748", "wgs_master": "JAGYPE000000000.2", "refseq_category": "reference genome", "taxid": "2833578", "species_taxid": "2833578", "organism_name": "Neobacillus citreus", "infraspecific_name": "strain=FJAT-50051", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/09", "asm_name": "ASM1834354v2", "asm_submitter": "Fujian Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_018343545.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/343/545/GCF_018343545.2_ASM1834354v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6044792", "genome_size_ungapped": "6037992", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "152", "contig_count": "152", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018343545.2-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "5939", "protein_coding_gene_count": "5765", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-09", "dateModified": "2022-03-09", "datePublished": "2022-03-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Neobacillus citreus" ], "sample_taxid": [ "2833578" ], "sample_host_organism": [ "citrus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Zhangzhou" ], "sample_host_location_id": [], "data_size": "1.726 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.61, "contamination": 0.52, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6044792", "Number of Sequences": "152", "Longest Sequences (bp)": "354085", "N50 (bp)": "76369", "Gap Ratio (%)": "0.112494", "GCcontent (%)": "41.0", "Number of CDSs": "5737", "Average Protein Length": "295.8", "Coding Ratio (%)": "84.2", "Number of rRNAs": "5", "Number of tRNAs": "64", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neobacillus citreus", "strain": "strain=FJAT-50051", "accession": "GCA_018343545.2", "taxid": 2833578, "species_taxid": 2833578, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1925, 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2738405, "species_taxid": 2738405, "relation_to_type": "type", "validated": true, "ani": 78.0995, "matched_fragments": 371, "total_fragments": 1939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus fumarioli", "strain": "strain=NBRC 102428", "accession": "GCA_001591485.1", "taxid": 105229, "species_taxid": 105229, "relation_to_type": "type", "validated": true, "ani": 77.5569, "matched_fragments": 274, "total_fragments": 1939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus benzoevorans", "strain": "strain=DSM 5391", "accession": "GCA_014207535.1", "taxid": 1456, "species_taxid": 1456, "relation_to_type": "type", "validated": true, "ani": 77.3195, "matched_fragments": 133, "total_fragments": 1939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoneobacillus rhizosphaerae", "strain": "strain=CIP 111885", "accession": "GCA_917563885.1", "taxid": 2880968, "species_taxid": 2880968, 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78.8572, "matched_fragments": 481, "total_fragments": 1939, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016107705.1", "gtdb_species": "s__Neobacillus cucumis_B", "ani": 78.6895, "matched_fragments": 423, "total_fragments": 1939, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004358205.1", "gtdb_species": "s__Neobacillus salipaludis", "ani": 78.644, "matched_fragments": 410, "total_fragments": 1939, "gtdb_taxonomy": 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