{
    "type": "genome",
    "identifier": "GCF_018343775.1",
    "organism": "Pseudomonas cichorii",
    "title": "Pseudomonas cichorii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Yunnan Academy of Tobacco Agriculture Science",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_018343775.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18970121",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "36746",
        "species_taxid": "36746",
        "organism_name": "Pseudomonas cichorii",
        "infraspecific_name": "strain=DSM 50259",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/12",
        "asm_name": "ASM1834377v1",
        "asm_submitter": "Yunnan Academy of Tobacco Agriculture Science",
        "gbrs_paired_asm": "GCA_018343775.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/343/775/GCF_018343775.1_ASM1834377v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5984143",
        "genome_size_ungapped": "5984143",
        "gc_percent": "58.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_018343775.1-RS_2024_11_19",
        "annotation_date": "2024-11-19",
        "total_gene_count": "5205",
        "protein_coding_gene_count": "5037",
        "non_coding_gene_count": "88",
        "pubmed_id": "36282564"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-12",
    "dateModified": "2021-05-12",
    "datePublished": "2021-05-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonas cichorii"
        ],
        "sample_taxid": [
            "36746"
        ],
        "sample_host_organism": [
            "Cichorium endivia"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.678 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5984143",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "5984143",
        "N50 (bp)": "5984143",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.1",
        "Number of CDSs": "5126",
        "Average Protein Length": "347.7",
        "Coding Ratio (%)": "89.3",
        "Number of rRNAs": "19",
        "Number of tRNAs": "65",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Pseudomonas cichorii",
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                "relation_to_type": "suspected-type",
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                "ani_threshold": 95,
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            {
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                "relation_to_type": "suspected-type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudomonas cichorii",
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                "accession": "GCA_015471425.1",
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                "matched_fragments": 1936,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudomonas syringae group genomosp. 3",
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                "accession": "GCA_001400635.1",
                "taxid": 251701,
                "species_taxid": 251701,
                "relation_to_type": "pathovar",
                "validated": true,
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                "matched_fragments": 1156,
                "total_fragments": 1994,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas syringae group genomosp. 3",
                "strain": "strain=ICMP3882",
                "accession": "GCA_001400955.1",
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                "species_taxid": 251701,
                "relation_to_type": "pathovar",
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                "ani": 83.1961,
                "matched_fragments": 1184,
                "total_fragments": 1994,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas viridiflava",
                "strain": "strain=DSM 6694",
                "accession": "GCA_001305955.1",
                "taxid": 33069,
                "species_taxid": 33069,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1945,
                "matched_fragments": 1197,
                "total_fragments": 1994,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas avellanae",
                "strain": "strain=JCM 11937",
                "accession": "GCA_014646595.1",
                "taxid": 46257,
                "species_taxid": 46257,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9495,
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                "total_fragments": 1994,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas avellanae",
                "strain": "strain=BPIC 631",
                "accession": "GCA_000302915.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas syringae group genomosp. 3",
                "strain": "strain=DC3000",
                "accession": "GCA_000007805.1",
                "taxid": 251701,
                "species_taxid": 251701,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.8361,
                "matched_fragments": 1212,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas syringae group genomosp. 3",
                "strain": "strain=ICMP3963",
                "accession": "GCA_001401175.1",
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                "species_taxid": 251701,
                "relation_to_type": "pathovar",
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                "matched_fragments": 1186,
                "total_fragments": 1994,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas syringae group genomosp. 3",
                "strain": "strain=CFBP 1702",
                "accession": "GCA_000935765.1",
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                "relation_to_type": "pathovar",
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                "ani": 82.7466,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas cannabina",
                "strain": "strain=ICMP 15200",
                "accession": "GCA_001401375.1",
                "taxid": 86840,
                "species_taxid": 86840,
                "relation_to_type": "pathovar",
                "validated": true,
                "ani": 82.6788,
                "matched_fragments": 1083,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas pergaminensis",
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                "accession": "GCA_024112395.1",
                "taxid": 2853159,
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                "relation_to_type": "type",
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                "matched_fragments": 931,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas plecoglossicida",
                "strain": "strain=NBRC 103162",
                "accession": "GCA_000730665.1",
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                "species_taxid": 70775,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.4055,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas faucium",
                "strain": "strain=BML-PP048",
                "accession": "GCA_021602585.1",
                "taxid": 2740518,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas faucium",
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                "accession": "GCA_013373935.1",
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                "ani": 80.3074,
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                "status": "below_threshold"
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            {
                "organism_name": "Pseudomonas plecoglossicida",
                "strain": "strain=DSM 15088",
                "accession": "GCA_000688275.1",
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                "ani": 80.3073,
                "matched_fragments": 733,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas ceruminis",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas cavernicola",
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                "matched_fragments": 570,
                "total_fragments": 1994,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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        "gtdb_result": [
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                "accession": "GCF_018343775.1",
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                "total_fragments": 1994,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
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    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}