{ "type": "genome", "identifier": "GCF_018359985.1", "organism": "Aeromonas media", "title": "Aeromonas media", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institut d'Investigacio Biomedica Sant Pau", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018359985.1", "bioproject": "PRJNA224116", "biosample": "SAMN17101837", "wgs_master": "JAGDEO000000000.1", "refseq_category": "na", "taxid": "651", "species_taxid": "651", "organism_name": "Aeromonas media", "infraspecific_name": "strain=ATCC 33907", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/14", "asm_name": "ASM1835998v1", "asm_submitter": "Institut d'Investigacio Biomedica Sant Pau", "gbrs_paired_asm": "GCA_018359985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/359/985/GCF_018359985.1_ASM1835998v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4469144", "genome_size_ungapped": "4469144", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "199", "contig_count": "199", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018359985.1-RS_2024_05_21", "annotation_date": "2024-05-21", "total_gene_count": "4250", "protein_coding_gene_count": "4026", "non_coding_gene_count": "115", "pubmed_id": "33800590" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-14", "dateModified": "2021-05-14", "datePublished": "2021-05-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Aeromonas media" ], "sample_taxid": [ "651" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "None" ], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "1.258 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.48, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4469144", "Number of Sequences": "199", "Longest Sequences (bp)": "168963", "N50 (bp)": "60371", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.2", "Number of CDSs": "4050", "Average Protein Length": "313.4", "Coding Ratio (%)": "85.2", "Number of rRNAs": "4", "Number of tRNAs": "107", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aeromonas media", "strain": "strain=ATCC 33907", "accession": "GCA_018359985.1", "taxid": 651, "species_taxid": 651, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1405, "total_fragments": 1412, "ani_threshold": 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