{ "type": "genome", "identifier": "GCF_018362775.1", "organism": "Alistipes montrealensis", "title": "Alistipes montrealensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CRCHUM", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018362775.1", "bioproject": "PRJNA224116", "biosample": "SAMN19025529", "wgs_master": "JAGYXY000000000.1", "refseq_category": "reference genome", "taxid": "2834113", "species_taxid": "2834113", "organism_name": "Alistipes montrealensis", "infraspecific_name": "strain=kh20", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/15", "asm_name": "Alistipes_kh20", "asm_submitter": "CRCHUM", "gbrs_paired_asm": "GCA_018362775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/362/775/GCF_018362775.1_Alistipes_kh20", "excluded_from_refseq": "na", 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"Canada: Montreal" ], "sample_host_location_id": [], "data_size": "0.978 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3484450", "Number of Sequences": "13", "Longest Sequences (bp)": "839650", "N50 (bp)": "691467", "Gap Ratio (%)": "0.025198", "GCcontent (%)": "57.2", "Number of CDSs": "2716", "Average Protein Length": "388.3", "Coding Ratio (%)": "90.8", "Number of rRNAs": "2", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alistipes montrealensis", "strain": "strain=kh20", "accession": "GCA_018362775.1", "taxid": 2834113, "species_taxid": 2834113, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1152, "total_fragments": 1154, 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"0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_001941065.1", "gtdb_species": "s__Alistipes sp001941065", "ani": 85.3817, "matched_fragments": 637, "total_fragments": 1154, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000312145.1", "gtdb_species": "s__Alistipes senegalensis", "ani": 85.1841, "matched_fragments": 707, "total_fragments": 1154, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;g__Alistipes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.29", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.66", "num_clustered_genomes": 10, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.6, "cell_length": -0.098, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 7.0, "genome_size": 3170459.528, "gc_content": 56.414, "coding_genes": 2833.0, "rRNA16S_genes": 2.0, "tRNA_genes": 48.0, "gram_stain": 0.166, "sporulation": 0.0, "motility": 0.166, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.833, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.166, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Alistipes", "montrealensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }