{ "type": "genome", "identifier": "GCF_018380615.1", "organism": "Flavobacterium psychroterrae", "title": "Flavobacterium psychroterrae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Masaryk University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018380615.1", "bioproject": "PRJNA224116", "biosample": "SAMN19040472", "wgs_master": "JAGYVZ000000000.1", "refseq_category": "reference genome", "taxid": "2133767", "species_taxid": "2133767", "organism_name": "Flavobacterium psychroterrae", "infraspecific_name": "strain=CCM 8827", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/17", "asm_name": "ASM1838061v1", "asm_submitter": "Masaryk University", "gbrs_paired_asm": "GCA_018380615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/380/615/GCF_018380615.1_ASM1838061v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5738131", "genome_size_ungapped": "5737836", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "115", "contig_count": "115", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018380615.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5083", "protein_coding_gene_count": "4942", "non_coding_gene_count": "66", "pubmed_id": "30095387" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-17", "dateModified": "2021-05-17", "datePublished": "2021-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium psychroterrae" ], "sample_taxid": [ "2133767" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "1.597 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5738131", "Number of Sequences": "115", "Longest Sequences (bp)": "531268", "N50 (bp)": "190479", "Gap Ratio (%)": "0.005664", "GCcontent (%)": "33.3", "Number of CDSs": "4949", "Average Protein Length": "328.0", "Coding Ratio (%)": "84.9", "Number of rRNAs": "4", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium psychroterrae", "strain": "strain=CCM 8827", "accession": "GCA_018380615.1", "taxid": 2133767, "species_taxid": 2133767, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1865, "total_fragments": 1869, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_902804475.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 85.7168, "matched_fragments": 1212, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_904425415.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 85.6885, "matched_fragments": 1250, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscis", "strain": "strain=CCUG 60099", "accession": "GCA_001686925.1", "taxid": 1114874, "species_taxid": 1114874, "relation_to_type": "type", "validated": true, "ani": 85.4649, "matched_fragments": 1258, "total_fragments": 1869, "ani_threshold": 95, 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"organism_name": "Flavobacterium araucananum", "strain": "strain=DSM 24704", "accession": "GCA_003148525.1", "taxid": 946678, "species_taxid": 946678, "relation_to_type": "type", "validated": true, "ani": 85.3333, "matched_fragments": 1298, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pectinovorum", "strain": "strain=DSM 6368", "accession": "GCA_900142715.1", "taxid": 29533, "species_taxid": 29533, "relation_to_type": "type", "validated": true, "ani": 84.0733, "matched_fragments": 1203, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pectinovorum", "strain": "strain=ATCC 19366", "accession": "GCA_002217365.1", "taxid": 29533, "species_taxid": 29533, "relation_to_type": "type", "validated": true, "ani": 83.9795, "matched_fragments": 1207, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium 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"taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 81.5271, "matched_fragments": 1040, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 81.2834, "matched_fragments": 1042, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium davisii", "strain": "strain=90-106", "accession": "GCA_019565505.1", "taxid": 2906077, "species_taxid": 2906077, "relation_to_type": "type", "validated": true, "ani": 76.6756, "matched_fragments": 162, "total_fragments": 1869, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018380615.1", "gtdb_species": 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