{ "type": "genome", "identifier": "GCF_018390555.1", "organism": "Ancylobacter oerskovii", "title": "Ancylobacter oerskovii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Institute of Microbiology of the Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018390555.1", "bioproject": "PRJNA224116", "biosample": "SAMN19065678", "wgs_master": "JAHBGB000000000.1", "refseq_category": "reference genome", "taxid": "459519", "species_taxid": "459519", "organism_name": "Ancylobacter oerskovii", "infraspecific_name": "strain=CCM 7435", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/17", "asm_name": "ASM1839055v1", "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_018390555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/390/555/GCF_018390555.1_ASM1839055v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5480425", "genome_size_ungapped": "5480403", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "46", "contig_count": "46", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018390555.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "5156", "protein_coding_gene_count": "4991", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-17", "dateModified": "2021-05-17", "datePublished": "2021-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Ancylobacter oerskovii" ], "sample_taxid": [ "459519" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.483 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5480425", "Number of Sequences": "46", "Longest Sequences (bp)": "983230", "N50 (bp)": "416854", "Gap Ratio (%)": "0.000474", "GCcontent (%)": "68.2", "Number of CDSs": "5155", "Average Protein Length": "309.9", "Coding Ratio (%)": "87.5", "Number of rRNAs": "3", "Number of tRNAs": "59", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ancylobacter oerskovii", "strain": "strain=CCM 7435", "accession": "GCA_018390555.1", "taxid": 459519, "species_taxid": 459519, 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"matched_fragments": 1018, "total_fragments": 1806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya koreensis", "strain": "strain=Jip08", "accession": "GCA_023016525.1", "taxid": 266121, "species_taxid": 266121, "relation_to_type": "type", "validated": true, "ani": 84.177, "matched_fragments": 923, "total_fragments": 1806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter dichloromethanicus", "strain": "strain=VKM B-2484", "accession": "GCA_018390645.1", "taxid": 518825, "species_taxid": 518825, "relation_to_type": "type", "validated": true, "ani": 83.8678, "matched_fragments": 970, "total_fragments": 1806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter oligotrophicus", "strain": "strain=29k", "accession": "GCA_008364685.1", "taxid": 2607286, "species_taxid": 2607286, "relation_to_type": "type", "validated": true, "ani": 79.0523, "matched_fragments": 655, "total_fragments": 1806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter aminoxidans", "strain": "strain=ATCC BAA-299", "accession": "GCA_023571765.1", "taxid": 186280, "species_taxid": 186280, "relation_to_type": "type", "validated": true, "ani": 79.0118, "matched_fragments": 658, "total_fragments": 1806, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 77.398, "matched_fragments": 581, "total_fragments": 1806, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018390555.1", "gtdb_species": "s__Ancylobacter_B oerskovii", "ani": 100.0, "matched_fragments": 1804, "total_fragments": 1806, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Ancylobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_018390695.1", "gtdb_species": "s__Ancylobacter_B sonchi", "ani": 89.7031, "matched_fragments": 1371, "total_fragments": 1806, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Ancylobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018390605.1", "gtdb_species": "s__Ancylobacter_B defluvii", "ani": 88.9645, "matched_fragments": 1337, "total_fragments": 1806, "gtdb_taxonomy": 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