{
    "type": "genome",
    "identifier": "GCF_018390575.1",
    "organism": "Bhargavaea massiliensis",
    "title": "Bhargavaea massiliensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "IHU Mediterranee Infection",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_018390575.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN19036645",
        "wgs_master": "JAHBCJ000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2697500",
        "species_taxid": "2697500",
        "organism_name": "Bhargavaea massiliensis",
        "infraspecific_name": "strain=Marseille-Q1000",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/17",
        "asm_name": "ASM1839057v1",
        "asm_submitter": "IHU Mediterranee Infection",
        "gbrs_paired_asm": "GCA_018390575.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/390/575/GCF_018390575.1_ASM1839057v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3062549",
        "genome_size_ungapped": "3062160",
        "gc_percent": "54.000000",
        "replicon_count": "0",
        "scaffold_count": "44",
        "contig_count": "44",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_018390575.1-RS_2024_03_13",
        "annotation_date": "2024-03-13",
        "total_gene_count": "3068",
        "protein_coding_gene_count": "2990",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-17",
    "dateModified": "2021-05-17",
    "datePublished": "2021-05-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bhargavaea massiliensis"
        ],
        "sample_taxid": [
            "2697500"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Nigeria: Sokoto"
        ],
        "sample_host_location_id": [],
        "data_size": "0.871 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3062549",
        "Number of Sequences": "44",
        "Longest Sequences (bp)": "524763",
        "N50 (bp)": "356213",
        "Gap Ratio (%)": "0.012702",
        "GCcontent (%)": "53.8",
        "Number of CDSs": "3073",
        "Average Protein Length": "291.6",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Bhargavaea massiliensis",
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                "accession": "GCA_018390575.1",
                "taxid": 2697500,
                "species_taxid": 2697500,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1008,
                "total_fragments": 1008,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bhargavaea beijingensis",
                "strain": "strain=CGMCC 1.6762",
                "accession": "GCA_900101985.1",
                "taxid": 426756,
                "species_taxid": 426756,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.0511,
                "matched_fragments": 826,
                "total_fragments": 1008,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bhargavaea cecembensis",
                "strain": "strain=DSE10",
                "accession": "GCA_000348905.1",
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                "species_taxid": 394098,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.5947,
                "matched_fragments": 841,
                "total_fragments": 1008,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bhargavaea ginsengi",
                "strain": "strain=CGMCC 1.6763",
                "accession": "GCA_900109165.1",
                "taxid": 426757,
                "species_taxid": 426757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3983,
                "matched_fragments": 779,
                "total_fragments": 1008,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus maitriensis",
                "strain": "strain=S1",
                "accession": "GCA_003289925.1",
                "taxid": 221799,
                "species_taxid": 221799,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3007,
                "matched_fragments": 60,
                "total_fragments": 1008,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus plakortidis",
                "strain": "strain=DSM 23997",
                "accession": "GCA_001687605.2",
                "taxid": 1038856,
                "species_taxid": 1038856,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1051,
                "matched_fragments": 66,
                "total_fragments": 1008,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_018390575.1",
                "gtdb_species": "s__Bhargavaea sp018390575",
                "ani": 100.0,
                "matched_fragments": 1008,
                "total_fragments": 1008,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Bhargavaea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900101985.1",
                "gtdb_species": "s__Bhargavaea beijingensis",
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                "matched_fragments": 826,
                "total_fragments": 1008,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Bhargavaea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.27",
                "min_intra_species_ani": "99.27",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000348905.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Bhargavaea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009761675.1",
                "gtdb_species": "s__Bhargavaea sp009761675",
                "ani": 86.2328,
                "matched_fragments": 856,
                "total_fragments": 1008,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Bhargavaea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001619585.1",
                "gtdb_species": "s__Bhargavaea cecembensis_A",
                "ani": 85.7355,
                "matched_fragments": 834,
                "total_fragments": 1008,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Bhargavaea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.027,
        "cell_length": 0.346,
        "doubling_h": null,
        "growth_tmp": 29.4,
        "optimum_tmp": 31.75,
        "optimum_ph": 7.437,
        "genome_size": 3090934.5,
        "gc_content": 54.8,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.75,
        "coccus_cell_shape": 0.25,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Bhargavaea",
        "massiliensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}