{ "type": "genome", "identifier": "GCF_018403685.1", "organism": "Xylanibacillus composti", "title": "Xylanibacillus composti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Japan International Research Center for Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018403685.1", "bioproject": "PRJNA224116", "biosample": "SAMD00296212", "wgs_master": "BOVK00000000.1", "refseq_category": "reference genome", "taxid": "1572762", "species_taxid": "1572762", "organism_name": "Xylanibacillus composti", "infraspecific_name": "strain=K13", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/24", "asm_name": "ASM1840368v1", "asm_submitter": "Japan International Research Center for Agricultural Sciences", "gbrs_paired_asm": "GCA_018403685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/403/685/GCF_018403685.1_ASM1840368v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4652266", "genome_size_ungapped": "4652266", "gc_percent": "52.500000", "replicon_count": "0", "scaffold_count": "115", "contig_count": "115", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018403685.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4410", "protein_coding_gene_count": "4278", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-24", "dateModified": "2021-04-24", "datePublished": "2021-04-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Xylanibacillus composti" ], "sample_taxid": [ "1572762" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.331 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4652266", "Number of Sequences": "115", "Longest Sequences (bp)": "241757", "N50 (bp)": "90186", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.3", "Number of CDSs": "4388", "Average Protein Length": "303.3", "Coding Ratio (%)": "85.8", "Number of rRNAs": "1", "Number of tRNAs": "45", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Xylanibacillus composti", "strain": "strain=K13", "accession": "GCA_018403685.1", "taxid": 1572762, "species_taxid": 1572762, 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"below_threshold" }, { "organism_name": "Paenibacillus nanensis", "strain": "strain=DSM 22867", "accession": "GCA_003583765.1", "taxid": 393251, "species_taxid": 393251, "relation_to_type": "type", "validated": true, "ani": 76.0712, "matched_fragments": 92, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella xylanilytica", "strain": "strain=DSM 25239", "accession": "GCA_014212175.1", "taxid": 557555, "species_taxid": 557555, "relation_to_type": "type", "validated": true, "ani": 76.0624, "matched_fragments": 89, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobacillus xylanilyticus", "strain": "strain=XE", "accession": "GCA_907165215.1", "taxid": 76633, "species_taxid": 76633, "relation_to_type": "type", "validated": true, "ani": 76.054, "matched_fragments": 78, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus hemerocallicola", "strain": "strain=KCTC 33185", "accession": "GCA_006265175.1", "taxid": 1172614, "species_taxid": 1172614, "relation_to_type": "type", "validated": true, "ani": 75.9981, "matched_fragments": 99, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus paeoniae", "strain": "strain=M4BSY-1", "accession": "GCA_003388735.1", "taxid": 2292705, "species_taxid": 2292705, "relation_to_type": "type", "validated": true, "ani": 75.9685, "matched_fragments": 57, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus athensensis", "strain": "strain=MEC069", "accession": "GCA_004514475.2", "taxid": 1967502, "species_taxid": 1967502, "relation_to_type": "type", "validated": true, "ani": 75.9615, "matched_fragments": 94, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus mendelii", "strain": "strain=C/2", "accession": "GCA_024498075.1", "taxid": 206163, "species_taxid": 206163, "relation_to_type": "type", "validated": true, "ani": 75.9605, "matched_fragments": 59, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus methanolicus", "strain": "strain=BL24", "accession": "GCA_008124765.1", "taxid": 582686, "species_taxid": 582686, "relation_to_type": "type", "validated": true, "ani": 75.8458, "matched_fragments": 85, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus kobensis", "strain": "strain=NBRC 15729", "accession": "GCA_004000825.1", "taxid": 59841, "species_taxid": 59841, "relation_to_type": "type", "validated": true, "ani": 75.7452, "matched_fragments": 61, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus cymbidii", "strain": "strain=R196", "accession": "GCA_004764705.1", "taxid": 1639034, 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