{ "type": "genome", "identifier": "GCF_018406645.1", "organism": "Lysobacter helvus", "title": "Lysobacter helvus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Japan Advanced Institute of Science and Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018406645.1", "bioproject": "PRJNA224116", "biosample": "SAMN18452709", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2675059", "species_taxid": "2675059", "organism_name": "Lysobacter helvus", "infraspecific_name": "strain=JCM32364", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/30", "asm_name": "ASM1840664v1", "asm_submitter": "Japan Advanced Institute of Science and Technology", "gbrs_paired_asm": "GCA_018406645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/406/645/GCF_018406645.1_ASM1840664v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3270620", "genome_size_ungapped": "3270620", "gc_percent": "68.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018406645.1-RS_2024_05_12", "annotation_date": "2024-05-12", "total_gene_count": "3188", "protein_coding_gene_count": "3103", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-30", "dateModified": "2021-03-30", "datePublished": "2021-03-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Lysobacter helvus" ], "sample_taxid": [ "2675059" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju" ], "sample_host_location_id": [], "data_size": "0.879 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3270620", "Number of Sequences": "1", "Longest Sequences (bp)": "3270620", "N50 (bp)": "3270620", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.9", "Number of CDSs": "3156", "Average Protein Length": "319.9", "Coding Ratio (%)": "92.6", "Number of rRNAs": "6", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter gilvus", "strain": "strain=HX-5-24", "accession": "GCA_009740395.1", "taxid": 2682097, "species_taxid": 2682097, 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81.505, "matched_fragments": 545, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas aquatica", "strain": "strain=SY21", "accession": "GCA_006337105.1", "taxid": 2202149, "species_taxid": 2202149, "relation_to_type": "type", "validated": true, "ani": 81.2853, "matched_fragments": 545, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas weifangensis", "strain": "strain=WF-2", "accession": "GCA_003416885.1", "taxid": 2303539, "species_taxid": 2303539, "relation_to_type": "type", "validated": true, "ani": 81.251, "matched_fragments": 537, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter silvisoli", "strain": "strain=zong2l5", "accession": "GCA_003382365.1", "taxid": 2293254, "species_taxid": 2293254, "relation_to_type": "type", "validated": true, "ani": 81.0101, "matched_fragments": 591, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas mephitis", "strain": "strain=DSM 12574", "accession": "GCA_000422305.1", "taxid": 83615, "species_taxid": 83615, "relation_to_type": "type", "validated": true, "ani": 81.0059, "matched_fragments": 556, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aquatica", "strain": "strain=RIB1-20", "accession": "GCA_022662575.1", "taxid": 450364, "species_taxid": 450364, "relation_to_type": "type", "validated": true, "ani": 80.9755, "matched_fragments": 559, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas cucumeris", "strain": "strain=CGMCC 1.10821", "accession": "GCA_007830035.1", "taxid": 985012, "species_taxid": 985012, "relation_to_type": "type", "validated": true, "ani": 80.9037, "matched_fragments": 552, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 80.8968, "matched_fragments": 511, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter prati", "strain": "strain=SYSU H10001", "accession": "GCA_009765215.1", "taxid": 2596704, "species_taxid": 2596704, "relation_to_type": "type", "validated": true, "ani": 80.8755, "matched_fragments": 566, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas sangjuensis", "strain": "strain=DSM 28345", "accession": "GCA_010211755.1", "taxid": 1503750, "species_taxid": 1503750, "relation_to_type": "type", "validated": true, "ani": 80.7123, "matched_fragments": 506, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas colneyensis", "strain": "strain=Sa2BVA3", "accession": "GCA_014836665.1", "taxid": 2762230, "species_taxid": 2762230, "relation_to_type": "type", "validated": true, "ani": 80.5971, "matched_fragments": 501, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas helianthi", "strain": "strain=110414", "accession": "GCA_017939625.1", "taxid": 1453541, "species_taxid": 1453541, "relation_to_type": "type", "validated": true, "ani": 80.5833, "matched_fragments": 511, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas padinae", "strain": "strain=KCTC 52403", "accession": "GCA_014652935.1", "taxid": 1714359, "species_taxid": 1714359, "relation_to_type": "type", "validated": true, "ani": 80.5568, "matched_fragments": 493, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas arsenica", "strain": "strain=26-35", "accession": "GCA_004352825.1", "taxid": 1586242, "species_taxid": 1586242, "relation_to_type": "type", "validated": true, "ani": 80.5382, "matched_fragments": 511, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter psychrotolerans", "strain": "strain=ZS60", "accession": "GCA_003719825.1", "taxid": 1327343, "species_taxid": 1327343, "relation_to_type": "type", "validated": true, "ani": 80.5266, "matched_fragments": 542, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter capsici", "strain": "strain=VKM B-2533", "accession": "GCA_014779555.2", "taxid": 435897, "species_taxid": 435897, "relation_to_type": "type", "validated": true, "ani": 80.5143, "matched_fragments": 591, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter daejeonensis", "strain": "strain=GH1-9", "accession": "GCA_000768355.1", "taxid": 346181, "species_taxid": 346181, 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"vibrio_cell_shape": 0.058, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Lysobacter", "helvus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }