{ "type": "genome", "identifier": "GCF_018409545.1", "organism": "Allochromatium tepidum", "title": "Allochromatium tepidum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Genetics", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018409545.1", "bioproject": "PRJNA224116", "biosample": "SAMD00284386", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "553982", "species_taxid": "553982", "organism_name": "Allochromatium tepidum", "infraspecific_name": "strain=NZ", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/16", "asm_name": "ASM1840954v1", "asm_submitter": "National Institute of Genetics", "gbrs_paired_asm": "GCA_018409545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/409/545/GCF_018409545.1_ASM1840954v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3384614", "genome_size_ungapped": "3384614", "gc_percent": "64.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018409545.1-RS_2024_03_13", "annotation_date": "2024-03-13", "total_gene_count": "3293", "protein_coding_gene_count": "3124", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-16", "dateModified": "2021-04-16", "datePublished": "2021-04-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Allochromatium tepidum" ], "sample_taxid": [ "553982" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand" ], "sample_host_location_id": [], "data_size": "0.929 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3384614", "Number of Sequences": "2", "Longest Sequences (bp)": "3208690", "N50 (bp)": "3208690", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.5", "Number of CDSs": "3226", "Average Protein Length": "314.8", "Coding Ratio (%)": "90.0", "Number of rRNAs": "9", "Number of tRNAs": "51", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Allochromatium tepidum", "strain": "strain=NZ", "accession": "GCA_018409545.1", "taxid": 553982, "species_taxid": 553982, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1126, "total_fragments": 1127, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Allochromatium humboldtianum", "strain": "strain=DSM 21881", "accession": "GCA_013385175.1", "taxid": 504901, "species_taxid": 504901, "relation_to_type": "type", "validated": true, "ani": 92.6084, "matched_fragments": 931, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium vinosum", "strain": "strain=DSM 180", "accession": "GCA_000025485.1", "taxid": 1049, "species_taxid": 1049, "relation_to_type": "type", "validated": true, "ani": 91.0968, "matched_fragments": 872, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocystis violacea", "strain": "strain=DSM 207", "accession": "GCA_016583575.1", "taxid": 13725, "species_taxid": 13725, "relation_to_type": "type", "validated": true, "ani": 81.0854, "matched_fragments": 662, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium purpuratum", "strain": "strain=984", "accession": "GCA_000224005.3", "taxid": 37487, "species_taxid": 37487, "relation_to_type": "type", "validated": true, "ani": 80.3751, "matched_fragments": 553, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiorhodococcus minor", "strain": "strain=DSM 11518", "accession": "GCA_010820565.1", "taxid": 57489, "species_taxid": 57489, "relation_to_type": "type", "validated": true, "ani": 79.8512, "matched_fragments": 528, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocystis minor", "strain": "strain=DSM 178", "accession": "GCA_016653465.1", "taxid": 61597, "species_taxid": 61597, "relation_to_type": "type", "validated": true, "ani": 79.6384, "matched_fragments": 513, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium warmingii", "strain": "strain=DSM 173", "accession": "GCA_900107145.1", "taxid": 61595, "species_taxid": 61595, "relation_to_type": "type", "validated": true, "ani": 79.3887, "matched_fragments": 350, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocapsa rosea", "strain": "strain=DSM 235", "accession": "GCA_003634315.1", "taxid": 69360, "species_taxid": 69360, "relation_to_type": "type", "validated": true, "ani": 79.0847, "matched_fragments": 445, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocapsa bogorovii", "strain": "strain=BBS", "accession": "GCA_021228795.1", "taxid": 521689, "species_taxid": 521689, "relation_to_type": "type", "validated": true, "ani": 78.6612, "matched_fragments": 413, "total_fragments": 1127, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalocapsa marina", "strain": "strain=DSM 19078", "accession": "GCA_008632335.1", "taxid": 424902, "species_taxid": 424902, "relation_to_type": "type", 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Allochromatium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013385175.1", "gtdb_species": "s__Allochromatium humboldtianum", "ani": 92.6084, "matched_fragments": 931, "total_fragments": 1127, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Allochromatium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000025485.1", "gtdb_species": "s__Allochromatium vinosum", "ani": 91.1168, "matched_fragments": 871, "total_fragments": 1127, "gtdb_taxonomy": 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