{ "type": "genome", "identifier": "GCF_018413645.1", "organism": "Roseococcus pinisoli", "title": "Roseococcus pinisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Beijing Forestry University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018413645.1", "bioproject": "PRJNA224116", "biosample": "SAMN19093088", "wgs_master": "JAHCDA000000000.1", "refseq_category": "reference genome", "taxid": "2835040", "species_taxid": "2835040", "organism_name": "Roseococcus pinisoli", "infraspecific_name": "strain=XZZS9", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/19", "asm_name": "ASM1841364v1", "asm_submitter": "Beijing Forestry University", "gbrs_paired_asm": "GCA_018413645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/413/645/GCF_018413645.1_ASM1841364v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4792521", "genome_size_ungapped": "4792511", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018413645.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "4604", "protein_coding_gene_count": "4526", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-19", "dateModified": "2021-05-19", "datePublished": "2021-05-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseococcus pinisoli" ], "sample_taxid": [ "2835040" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Nenjiang" ], "sample_host_location_id": [], "data_size": "1.293 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4792521", "Number of Sequences": "12", "Longest Sequences (bp)": "1776910", "N50 (bp)": "1321675", "Gap Ratio (%)": "0.000209", "GCcontent (%)": "69.5", "Number of CDSs": "4590", "Average Protein Length": "319.6", "Coding Ratio (%)": "91.8", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseococcus pinisoli", "strain": "strain=XZZS9", "accession": "GCA_018413645.1", "taxid": 2835040, "species_taxid": 2835040, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1588, "total_fragments": 1591, "ani_threshold": 95, 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"Roseococcus microcysteis", "strain": "strain=NIBR12", "accession": "GCA_014764365.1", "taxid": 2771361, "species_taxid": 2771361, "relation_to_type": "type", "validated": true, "ani": 80.4451, "matched_fragments": 765, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius crocodyli", "strain": "strain=CCP-6", "accession": "GCA_004005855.1", "taxid": 1979269, "species_taxid": 1979269, "relation_to_type": "type", "validated": true, "ani": 79.113, "matched_fragments": 706, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rhizosphaerae", "strain": "strain=YW11", "accession": "GCA_002631185.1", "taxid": 1335062, "species_taxid": 1335062, "relation_to_type": "type", "validated": true, "ani": 79.0626, "matched_fragments": 621, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius lipocyclicus", "strain": "strain=CCUG 44693", 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