{ "type": "genome", "identifier": "GCF_018437505.1", "organism": "Spiractinospora alimapuensis", "title": "Spiractinospora alimapuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidad Tecnica Federico Santa Maria", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018437505.1", "bioproject": "PRJNA224116", "biosample": "SAMN18316776", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2820884", "species_taxid": "2820884", "organism_name": "Spiractinospora alimapuensis", "infraspecific_name": "strain=VN6-2", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/21", "asm_name": "ASM1843750v1", "asm_submitter": "Universidad Tecnica Federico Santa Maria", "gbrs_paired_asm": "GCA_018437505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/437/505/GCF_018437505.1_ASM1843750v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5864354", "genome_size_ungapped": "5864354", "gc_percent": "69.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018437505.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5470", "protein_coding_gene_count": "5291", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-21", "dateModified": "2021-05-21", "datePublished": "2021-05-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Spiractinospora alimapuensis" ], "sample_taxid": [ "2820884" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile:Valparaiso,Torpederas Beach" ], "sample_host_location_id": [], "data_size": "1.596 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5864354", "Number of Sequences": "1", "Longest Sequences (bp)": "5864354", "N50 (bp)": "5864354", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.3", "Number of CDSs": "5558", "Average Protein Length": "302.6", "Coding Ratio (%)": "86.0", "Number of rRNAs": "9", "Number of tRNAs": "52", "Number of CRISPRs": "19" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spiractinospora alimapuensis", "strain": "strain=VN6-2", "accession": "GCA_018437505.1", "taxid": 2820884, 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"status": "below_threshold" }, { "organism_name": "Nocardiopsis lucentensis", "strain": "strain=DSM 44048", "accession": "GCA_000341125.1", "taxid": 53441, "species_taxid": 53441, "relation_to_type": "type", "validated": true, "ani": 77.7063, "matched_fragments": 420, "total_fragments": 1954, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis salina", "strain": "strain=YIM 90010", "accession": "GCA_000341025.1", "taxid": 245836, "species_taxid": 245836, "relation_to_type": "type", "validated": true, "ani": 77.7062, "matched_fragments": 427, "total_fragments": 1954, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis kunsanensis", "strain": "strain=DSM 44524", "accession": "GCA_000340965.1", "taxid": 141693, "species_taxid": 141693, "relation_to_type": "type", "validated": true, "ani": 77.6355, "matched_fragments": 388, "total_fragments": 1954, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis xinjiangensis", "strain": "strain=YIM 90004", "accession": "GCA_000341145.1", "taxid": 124285, "species_taxid": 124285, "relation_to_type": "type", "validated": true, "ani": 77.6202, "matched_fragments": 417, "total_fragments": 1954, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis coralli", "strain": "strain=HNM0947", "accession": "GCA_014892575.1", "taxid": 2772213, "species_taxid": 2772213, "relation_to_type": "type", "validated": true, "ani": 77.5984, "matched_fragments": 518, "total_fragments": 1954, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis flavescens", "strain": "strain=CGMCC 4.5723", "accession": "GCA_900141985.1", "taxid": 758803, "species_taxid": 758803, "relation_to_type": "type", "validated": true, "ani": 77.5763, "matched_fragments": 532, "total_fragments": 1954, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonospora curvata", "strain": "strain=DSM 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