{ "type": "genome", "identifier": "GCF_018457175.1", "organism": "Pseudohalocynthiibacter aestuariivivens", "title": "Pseudohalocynthiibacter aestuariivivens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sungkyunkwan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018457175.1", "bioproject": "PRJNA224116", "biosample": "SAMN18309416", "wgs_master": "JAGFNU000000000.1", "refseq_category": "reference genome", "taxid": "1591409", "species_taxid": "1591409", "organism_name": "Pseudohalocynthiibacter aestuariivivens", "infraspecific_name": "strain=BS-W9", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/24", "asm_name": "ASM1845717v1", "asm_submitter": "Sungkyunkwan University", "gbrs_paired_asm": "GCA_018457175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/457/175/GCF_018457175.1_ASM1845717v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3903639", "genome_size_ungapped": "3903639", "gc_percent": "52.500000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018457175.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "3868", "protein_coding_gene_count": "3763", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-24", "dateModified": "2021-05-24", "datePublished": "2021-05-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudohalocynthiibacter aestuariivivens" ], "sample_taxid": [ "1591409" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Boseong" ], "sample_host_location_id": [], "data_size": "1.116 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3903639", "Number of Sequences": "44", "Longest Sequences (bp)": "790691", "N50 (bp)": "282511", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.5", "Number of CDSs": "3842", "Average Protein Length": "299.9", "Coding Ratio (%)": "88.6", "Number of rRNAs": "3", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudohalocynthiibacter aestuariivivens", "strain": "strain=BS-W9", "accession": "GCA_018457175.1", "taxid": 1591409, 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"validated": true, "ani": 76.7331, "matched_fragments": 100, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria haliotis", "strain": "strain=B1Z28", "accession": "GCA_013377785.1", "taxid": 2747601, "species_taxid": 2747601, "relation_to_type": "type", "validated": true, "ani": 76.6729, "matched_fragments": 93, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actibacterium pelagium", "strain": "strain=JN33", "accession": "GCA_002285415.1", "taxid": 2029103, "species_taxid": 2029103, "relation_to_type": "type", "validated": true, "ani": 76.6708, "matched_fragments": 102, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cochlodiniinecator piscidefendens", "strain": "strain=M26A2M", "accession": "GCA_011326755.1", "taxid": 2715756, "species_taxid": 2715756, "relation_to_type": "type", "validated": true, "ani": 76.6523, "matched_fragments": 114, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius aestuariivivens", "strain": "strain=GHTF-24", "accession": "GCA_004761875.1", "taxid": 1888910, "species_taxid": 1888910, "relation_to_type": "type", "validated": true, "ani": 76.6032, "matched_fragments": 73, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola alkalilacus", "strain": "strain=DJC", "accession": "GCA_003443995.1", "taxid": 2305252, "species_taxid": 2305252, "relation_to_type": "type", "validated": true, "ani": 76.5241, "matched_fragments": 80, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria meonggei", "strain": "strain=CECT 8411", "accession": "GCA_900172215.1", "taxid": 1446476, "species_taxid": 1446476, "relation_to_type": "type", "validated": true, "ani": 76.5165, "matched_fragments": 100, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter noctilucae", "strain": "strain=NB-68", "accession": "GCA_000622365.1", "taxid": 1342302, "species_taxid": 1342302, "relation_to_type": "type", "validated": true, "ani": 76.4766, "matched_fragments": 100, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera aquimarina", "strain": "strain=DSM 24565", "accession": "GCA_000473165.1", "taxid": 476529, "species_taxid": 476529, "relation_to_type": "type", "validated": true, "ani": 76.47, "matched_fragments": 110, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actibacterium pelagium", "strain": "strain=CGMCC 1.16012", "accession": "GCA_014644355.1", "taxid": 2029103, "species_taxid": 2029103, "relation_to_type": "type", "validated": true, "ani": 76.4572, "matched_fragments": 100, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius confluentis", "strain": "strain=SAG6", "accession": "GCA_002917925.1", "taxid": 1852027, "species_taxid": 1852027, "relation_to_type": "type", "validated": true, "ani": 76.4123, "matched_fragments": 77, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shimia haliotis", "strain": "strain=DSM 28453", "accession": "GCA_900114415.1", "taxid": 1280847, "species_taxid": 1280847, "relation_to_type": "type", "validated": true, "ani": 76.3967, "matched_fragments": 100, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Puniceibacterium confluentis", "strain": "strain=JSSK-17", "accession": "GCA_007923445.1", "taxid": 1958944, "species_taxid": 1958944, "relation_to_type": "type", "validated": true, "ani": 76.3315, "matched_fragments": 83, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius autumnalis", "strain": "strain=CECT 5118", "accession": "GCA_001458255.1", "taxid": 2072972, "species_taxid": 2072972, "relation_to_type": "type", "validated": true, "ani": 76.3191, "matched_fragments": 108, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontivivens insulae", "strain": "strain=DSM 103361", "accession": "GCA_003385715.1", "taxid": 1639689, "species_taxid": 1639689, "relation_to_type": "type", "validated": true, "ani": 76.305, "matched_fragments": 53, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita hallyeonensis", "strain": "strain=DSM 29431", "accession": "GCA_900129875.1", "taxid": 996342, "species_taxid": 996342, "relation_to_type": "type", "validated": true, "ani": 76.2558, "matched_fragments": 68, "total_fragments": 1279, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter ovatus", "strain": "strain=JA234", "accession": "GCA_900207575.1", "taxid": 439529, 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