{ "type": "genome", "identifier": "GCF_018459925.1", "organism": "Nocardioides aquaticus", "title": "Nocardioides aquaticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Polar Research Institute, Republic of Korea", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018459925.1", "bioproject": "PRJNA224116", "biosample": "SAMN19134681", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "160826", "species_taxid": "160826", "organism_name": "Nocardioides aquaticus", "infraspecific_name": "strain=KCTC 9944", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/24", "asm_name": "ASM1845992v1", "asm_submitter": "Korea Polar Research Institute, Republic of Korea", "gbrs_paired_asm": "GCA_018459925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/459/925/GCF_018459925.1_ASM1845992v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4580814", "genome_size_ungapped": "4580814", "gc_percent": "73.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018459925.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4483", "protein_coding_gene_count": "4367", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-24", "dateModified": "2021-05-24", "datePublished": "2021-05-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides aquaticus" ], "sample_taxid": [ "160826" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: Ekho Lake" ], "sample_host_location_id": [], "data_size": "1.198 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4580814", "Number of Sequences": "1", "Longest Sequences (bp)": "4580814", "N50 (bp)": "4580814", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.2", "Number of CDSs": "4513", "Average Protein Length": "310.8", "Coding Ratio (%)": "91.9", "Number of rRNAs": "6", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_016907435.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 81.7076, "matched_fragments": 797, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides kribbensis", "strain": "strain=DSM 16314", "accession": "GCA_015070375.1", "taxid": 305517, "species_taxid": 305517, "relation_to_type": "type", "validated": true, "ani": 81.6595, "matched_fragments": 819, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015339545.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 81.6347, "matched_fragments": 792, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015070765.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 81.592, "matched_fragments": 796, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013409965.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 81.537, "matched_fragments": 799, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013466785.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 81.473, "matched_fragments": 805, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides dongkuii", "strain": "strain=S-713", "accession": "GCA_014127485.1", "taxid": 2760089, "species_taxid": 2760089, "relation_to_type": "type", "validated": true, "ani": 81.2576, "matched_fragments": 769, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides dokdonensis", "strain": "strain=FR1436", "accession": "GCA_001653335.1", "taxid": 450734, "species_taxid": 450734, "relation_to_type": "type", "validated": true, "ani": 81.2007, "matched_fragments": 786, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lijunqiniae", "strain": "strain=S-531", "accession": "GCA_015024225.1", "taxid": 2760832, "species_taxid": 2760832, "relation_to_type": "type", "validated": true, "ani": 81.0904, "matched_fragments": 777, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides perillae", "strain": "strain=DSM 24552", "accession": "GCA_013409425.1", "taxid": 1119534, "species_taxid": 1119534, "relation_to_type": "type", "validated": true, "ani": 80.8756, "matched_fragments": 720, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides szechwanensis", "strain": "strain=CGMCC 1.11147", "accession": "GCA_900103935.1", "taxid": 1005944, "species_taxid": 1005944, "relation_to_type": "type", "validated": true, "ani": 80.817, "matched_fragments": 733, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides szechwanensis", "strain": "strain=NBRC 108562", "accession": "GCA_007992395.1", "taxid": 1005944, "species_taxid": 1005944, "relation_to_type": "type", "validated": true, "ani": 80.798, "matched_fragments": 741, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ungokensis", "strain": "strain=LMG 28591", "accession": "GCA_013466985.1", "taxid": 1643322, "species_taxid": 1643322, "relation_to_type": "type", "validated": true, "ani": 80.7851, "matched_fragments": 733, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides flavescens", "strain": "strain=YIM 123512", "accession": "GCA_009823805.1", "taxid": 2691959, "species_taxid": 2691959, "relation_to_type": "type", "validated": true, "ani": 80.7398, "matched_fragments": 781, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides litoris", "strain": "strain=DSM 103718", "accession": "GCA_006346315.1", "taxid": 1926648, "species_taxid": 1926648, "relation_to_type": "type", "validated": true, "ani": 80.6592, "matched_fragments": 815, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 80.3006, "matched_fragments": 710, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 80.2698, "matched_fragments": 653, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides glacieisoli", "strain": "strain=HLT3-15", "accession": "GCA_004137245.1", "taxid": 1168730, "species_taxid": 1168730, "relation_to_type": "type", "validated": true, "ani": 80.2068, "matched_fragments": 663, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides guangzhouensis", "strain": "strain=130", "accession": "GCA_004519545.1", "taxid": 2497878, "species_taxid": 2497878, "relation_to_type": "type", "validated": true, "ani": 80.0573, "matched_fragments": 696, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides rotundus", "strain": "strain=MCCC 1A10561", "accession": 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81.7229, "matched_fragments": 812, "total_fragments": 1526, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.79", "min_intra_species_ani": "97.79", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_016907435.1", "gtdb_species": "s__Nocardioides salarius", "ani": 81.636, "matched_fragments": 804, "total_fragments": 1526, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_013466785.1", "gtdb_species": "s__Nocardioides marinisabuli", "ani": 81.5158, 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