{ "type": "genome", "identifier": "GCF_018474025.1", "organism": "Alteromonas oceanisediminis", "title": "Alteromonas oceanisediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018474025.1", "bioproject": "PRJNA224116", "biosample": "SAMN19186168", "wgs_master": "JAHCTA000000000.1", "refseq_category": "reference genome", "taxid": "2836180", "species_taxid": "2836180", "organism_name": "Alteromonas oceanisediminis", "infraspecific_name": "strain=SM 2104", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/24", "asm_name": "ASM1847402v1", "asm_submitter": "Shandong university", "gbrs_paired_asm": "GCA_018474025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/474/025/GCF_018474025.1_ASM1847402v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3828537", "genome_size_ungapped": "3827438", "gc_percent": "48.000000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018474025.1-RS_2024_10_11", "annotation_date": "2024-10-11", "total_gene_count": "3559", "protein_coding_gene_count": "3464", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-24", "dateModified": "2021-05-24", "datePublished": "2021-05-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteromonas oceanisediminis" ], "sample_taxid": [ "2836180" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean" ], "sample_host_location_id": [], "data_size": "1.096 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 93.75, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3828537", "Number of Sequences": "25", "Longest Sequences (bp)": "686173", "N50 (bp)": "413961", "Gap Ratio (%)": "0.028705", "GCcontent (%)": "48.0", "Number of CDSs": "3483", "Average Protein Length": "330.1", "Coding Ratio (%)": "90.1", "Number of rRNAs": "1", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alteromonas oceanisediminis", "strain": "strain=SM 2104", "accession": "GCA_018474025.1", "taxid": 2836180, "species_taxid": 2836180, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1264, "total_fragments": 1264, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alteromonas australica", "strain": "strain=H 17", "accession": "GCA_000730385.1", "taxid": 589873, "species_taxid": 589873, "relation_to_type": "type", "validated": true, "ani": 80.0776, "matched_fragments": 79, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinimonas iocasae", "strain": "strain=KX18D6", "accession": "GCA_006228385.1", "taxid": 2572577, "species_taxid": 2572577, "relation_to_type": "type", "validated": true, "ani": 78.9343, "matched_fragments": 78, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas flava", "strain": "strain=P0211", "accession": "GCA_002807685.1", "taxid": 2048003, "species_taxid": 2048003, "relation_to_type": "type", "validated": true, "ani": 78.462, "matched_fragments": 145, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas antoniana", "strain": "strain=MD_567", "accession": "GCA_019249295.1", "taxid": 2803813, "species_taxid": 2803813, "relation_to_type": "type", "validated": true, "ani": 77.9932, "matched_fragments": 100, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas alba", "strain": "strain=190", "accession": "GCA_002993365.1", "taxid": 2079529, "species_taxid": 2079529, "relation_to_type": "type", "validated": true, "ani": 77.9704, "matched_fragments": 95, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas sediminis", "strain": "strain=U0105", "accession": "GCA_003820355.1", "taxid": 2259342, "species_taxid": 2259342, "relation_to_type": "type", "validated": true, "ani": 77.9153, "matched_fragments": 66, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas genovensis", "strain": "strain=LMG 24078", "accession": "GCA_010500895.1", "taxid": 471225, "species_taxid": 471225, "relation_to_type": "type", "validated": true, "ani": 77.8259, "matched_fragments": 72, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas aestuariivivens", "strain": "strain=KCTC 52655", "accession": "GCA_003367475.1", "taxid": 1938339, "species_taxid": 1938339, "relation_to_type": "type", "validated": true, "ani": 77.788, "matched_fragments": 80, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas facilis", "strain": "strain=P0213", "accession": "GCA_002807665.1", "taxid": 2048004, "species_taxid": 2048004, "relation_to_type": "type", "validated": true, "ani": 77.7805, "matched_fragments": 155, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas macleodii", "strain": "strain=ATCC 27126", "accession": "GCA_000172635.2", "taxid": 28108, "species_taxid": 28108, "relation_to_type": "type", "validated": true, "ani": 77.6862, "matched_fragments": 70, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinimonas profundi", "strain": "strain=HHU 13199", "accession": "GCA_014750655.1", "taxid": 2729140, "species_taxid": 2729140, "relation_to_type": "type", "validated": true, "ani": 77.654, "matched_fragments": 72, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas lipolytica", "strain": "strain=JW12", "accession": "GCA_001758465.1", "taxid": 1856405, "species_taxid": 1856405, "relation_to_type": "type", "validated": true, "ani": 77.4656, "matched_fragments": 75, "total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinimonas lutimaris", "strain": "strain=DPSR-4", "accession": "GCA_005222225.1", "taxid": 914153, "species_taxid": 914153, "relation_to_type": "type", "validated": 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"total_fragments": 1264, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 93.75, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018474025.1", "gtdb_species": "s__Alteromonas_E sp018474025", "ani": 100.0, "matched_fragments": 1264, "total_fragments": 1264, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000730385.1", "gtdb_species": "s__Alteromonas australica", "ani": 80.0776, "matched_fragments": 79, "total_fragments": 1264, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, 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"N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002807685.1", "gtdb_species": "s__Alteromonas_E flava", "ani": 78.4631, "matched_fragments": 146, "total_fragments": 1264, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006538345.1", "gtdb_species": "s__Alteromonas sp006538345", "ani": 78.1056, "matched_fragments": 56, "total_fragments": 1264, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": 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