{
    "type": "genome",
    "identifier": "GCF_018494055.1",
    "organism": "Rosenbergiella epipactidis",
    "title": "Rosenbergiella epipactidis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Complutense University of Madrid",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_018494055.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14600866",
        "wgs_master": "JABBFQ000000000.1",
        "refseq_category": "reference genome",
        "taxid": "1544694",
        "species_taxid": "1544694",
        "organism_name": "Rosenbergiella epipactidis",
        "infraspecific_name": "strain=2.1A",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/05/25",
        "asm_name": "ASM1849405v1",
        "asm_submitter": "Complutense University of Madrid",
        "gbrs_paired_asm": "GCA_018494055.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/494/055/GCF_018494055.1_ASM1849405v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3209866",
        "genome_size_ungapped": "3209866",
        "gc_percent": "47.500000",
        "replicon_count": "0",
        "scaffold_count": "37",
        "contig_count": "37",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_018494055.1-RS_2024_04_27",
        "annotation_date": "2024-04-27",
        "total_gene_count": "3148",
        "protein_coding_gene_count": "3009",
        "non_coding_gene_count": "64",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-05-25",
    "dateModified": "2021-05-25",
    "datePublished": "2021-05-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rosenbergiella epipactidis"
        ],
        "sample_taxid": [
            "1544694"
        ],
        "sample_host_organism": [
            "Epipactis palustris"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: Dune du Perroquet, Bray-Dunes"
        ],
        "sample_host_location_id": [],
        "data_size": "0.922 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3209866",
        "Number of Sequences": "37",
        "Longest Sequences (bp)": "596440",
        "N50 (bp)": "510141",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.6",
        "Number of CDSs": "3066",
        "Average Protein Length": "306.9",
        "Coding Ratio (%)": "88.0",
        "Number of rRNAs": "1",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
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                "species_taxid": 988801,
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                "status": "below_threshold"
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            {
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                "matched_fragments": 528,
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                "ani_threshold": 95,
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            },
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                "species_taxid": 66269,
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                "status": "below_threshold"
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            {
                "organism_name": "Tatumella saanichensis",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
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                "accession": "GCA_002095385.1",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Erwinia persicina",
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                "accession": "GCA_001571305.1",
                "taxid": 55211,
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            },
            {
                "organism_name": "Pantoea dispersa",
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                "accession": "GCA_014155765.1",
                "taxid": 59814,
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "organism_name": "Pantoea deleyi",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klebsiella aerogenes",
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                "validated": true,
                "ani": 78.1807,
                "matched_fragments": 98,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella perminowiae",
                "strain": "strain=SL6",
                "accession": "GCA_019049755.1",
                "taxid": 2816244,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 78.102,
                "matched_fragments": 85,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mixta tenebrionis",
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                "relation_to_type": "type",
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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        "gtdb_result": [
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                "accession": "GCF_018494055.1",
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                "total_fragments": 1060,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Rosenbergiella",
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                "mean_intra_species_ani": "N/A",
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    },
    "_bac2feature": {
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    "_genome_taxon": [
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        "epipactidis"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}