{ "type": "genome", "identifier": "GCF_018499875.1", "organism": "Kineosporia corallincola", "title": "Kineosporia corallincola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chulalongkorn University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018499875.1", "bioproject": "PRJNA224116", "biosample": "SAMN19091840", "wgs_master": "JAHBAY000000000.1", "refseq_category": "reference genome", "taxid": "2835133", "species_taxid": "2835133", "organism_name": "Kineosporia corallincola", "infraspecific_name": "strain=J2-2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/25", "asm_name": "ASM1849987v1", "asm_submitter": "Chulalongkorn University", "gbrs_paired_asm": "GCA_018499875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/499/875/GCF_018499875.1_ASM1849987v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8202634", "genome_size_ungapped": "8202634", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "53", "contig_count": "53", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018499875.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "7173", "protein_coding_gene_count": "7036", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-25", "dateModified": "2021-05-25", "datePublished": "2021-05-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Kineosporia corallincola" ], "sample_taxid": [ "2835133" ], "sample_host_organism": [ "Anthoza" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand" ], "sample_host_location_id": [], "data_size": "2.194 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8202634", "Number of Sequences": "53", "Longest Sequences (bp)": "977927", "N50 (bp)": "439232", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.9", "Number of CDSs": "7257", "Average Protein Length": "336.2", "Coding Ratio (%)": "89.2", "Number of rRNAs": "1", "Number of tRNAs": "76", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kineosporia corallincola", "strain": "strain=J2-2", "accession": "GCA_018499875.1", "taxid": 2835133, "species_taxid": 2835133, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2707, 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"Cellulomonas iranensis", "strain": "strain=NBRC 101100", "accession": "GCA_001552375.1", "taxid": 76862, "species_taxid": 76862, "relation_to_type": "type", "validated": true, "ani": 76.5634, "matched_fragments": 410, "total_fragments": 2708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella aeris", "strain": "strain=CIP 111667", "accession": "GCA_902703175.1", "taxid": 2761496, "species_taxid": 2761496, "relation_to_type": "type", "validated": true, "ani": 76.4417, "matched_fragments": 410, "total_fragments": 2708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=NBRC 104118", "accession": "GCA_001570825.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 76.4064, "matched_fragments": 394, "total_fragments": 2708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=JCM 14302", "accession": "GCA_004519295.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 76.3977, "matched_fragments": 390, "total_fragments": 2708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus telluris", "strain": "strain=DSM 45421", "accession": "GCA_900102745.1", "taxid": 1190417, "species_taxid": 1190417, "relation_to_type": "type", "validated": true, "ani": 76.3017, "matched_fragments": 634, "total_fragments": 2708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus pulveris", "strain": "strain=DSM 46839", "accession": "GCA_900188375.1", "taxid": 1564159, "species_taxid": 1564159, "relation_to_type": "type", "validated": true, "ani": 76.2945, "matched_fragments": 570, "total_fragments": 2708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora siamensis", "strain": "strain=NBRC 107568", "accession": "GCA_016863175.1", "taxid": 936338, "species_taxid": 936338, "relation_to_type": "type", "validated": true, "ani": 76.149, "matched_fragments": 693, "total_fragments": 2708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora takensis", "strain": "strain=NBRC 109077", "accession": "GCA_016863195.1", "taxid": 1367882, "species_taxid": 1367882, "relation_to_type": "type", "validated": true, "ani": 76.135, "matched_fragments": 692, "total_fragments": 2708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella alba", "strain": "strain=DSM 45237", "accession": "GCA_900106035.1", "taxid": 561176, "species_taxid": 561176, "relation_to_type": "type", "validated": true, "ani": 76.09, "matched_fragments": 708, "total_fragments": 2708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces monashensis", "strain": "strain=MUSC 1", "accession": "GCA_001866665.1", "taxid": 1678012, "species_taxid": 1678012, 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