{ "type": "genome", "identifier": "GCF_018500185.1", "organism": "Litoribacter ruber", "title": "Litoribacter ruber", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Applied Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018500185.1", "bioproject": "PRJNA224116", "biosample": "SAMN19114730", "wgs_master": "JAHBGI000000000.1", "refseq_category": "na", "taxid": "702568", "species_taxid": "702568", "organism_name": "Litoribacter ruber", "infraspecific_name": "strain=KCTC 22899", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/25", "asm_name": "ASM1850018v1", "asm_submitter": "Institute of Applied Microbiology", "gbrs_paired_asm": "GCA_018500185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/500/185/GCF_018500185.1_ASM1850018v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4123681", "genome_size_ungapped": "4123681", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "63", "contig_count": "63", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018500185.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3626", "protein_coding_gene_count": "3550", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-25", "dateModified": "2021-05-25", "datePublished": "2021-05-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Litoribacter ruber" ], "sample_taxid": [ "702568" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.170 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4123681", "Number of Sequences": "63", "Longest Sequences (bp)": "538511", "N50 (bp)": "370980", "Gap Ratio (%)": "0.000946", "GCcontent (%)": "43.9", "Number of CDSs": "3511", "Average Protein Length": "337.4", "Coding Ratio (%)": "86.2", "Number of rRNAs": "1", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Litoribacter populi", "strain": "strain=XAAS-A1", "accession": "GCA_007483685.1", "taxid": 2598460, "species_taxid": 2598460, "relation_to_type": "type", "validated": true, "ani": 82.4656, "matched_fragments": 889, "total_fragments": 1345, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Echinicola shivajiensis", "strain": "strain=AK12", "accession": "GCA_018642165.1", "taxid": 1035916, "species_taxid": 1035916, "relation_to_type": "type", "validated": true, "ani": 77.8436, "matched_fragments": 113, "total_fragments": 1345, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Echinicola arenosa", "strain": "strain=CAU 1574", "accession": "GCA_014841125.1", "taxid": 2774144, "species_taxid": 2774144, "relation_to_type": "type", "validated": true, "ani": 77.8072, "matched_fragments": 117, "total_fragments": 1345, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Echinicola salinicaeni", "strain": "strain=P51", "accession": "GCA_014280965.1", "taxid": 2762757, "species_taxid": 2762757, "relation_to_type": "type", "validated": true, "ani": 77.7275, "matched_fragments": 115, "total_fragments": 1345, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Echinicola 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