{ "type": "genome", "identifier": "GCF_018588945.1", "organism": "Microbacterium flavescens", "title": "Microbacterium flavescens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018588945.1", "bioproject": "PRJNA224116", "biosample": "SAMN18017939", "wgs_master": "JAFIWA000000000.1", "refseq_category": "reference genome", "taxid": "69366", "species_taxid": "69366", "organism_name": "Microbacterium flavescens", "infraspecific_name": "strain=JCM 3877", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/05/28", "asm_name": "ASM1858894v1", "asm_submitter": "Chinese Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_018588945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/588/945/GCF_018588945.1_ASM1858894v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3424211", "genome_size_ungapped": "3424201", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "17", "contig_count": "17", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018588945.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "3201", "protein_coding_gene_count": "3136", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-05-28", "dateModified": "2021-05-28", "datePublished": "2021-05-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Microbacterium flavescens" ], "sample_taxid": [ "69366" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "unknown" ], "sample_host_location_id": [], "data_size": "0.917 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3424211", "Number of Sequences": "17", "Longest Sequences (bp)": "793892", "N50 (bp)": "439065", "Gap Ratio (%)": "0.000292", "GCcontent (%)": "70.0", "Number of CDSs": "3163", "Average Protein Length": "332.8", "Coding Ratio (%)": "92.2", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microbacterium flavescens", "strain": "strain=JCM 3877", "accession": "GCA_018588945.1", "taxid": 69366, "species_taxid": 69366, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium telephonicum", "strain": "strain=S2T63", "accession": "GCA_003651225.1", "taxid": 1714841, "species_taxid": 1714841, "relation_to_type": "type", "validated": true, "ani": 81.367, "matched_fragments": 553, "total_fragments": 1131, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium pullorum", "strain": "strain=Sa4CUA7", "accession": "GCA_014836535.1", "taxid": 2762236, "species_taxid": 2762236, "relation_to_type": "type", "validated": true, "ani": 81.0627, "matched_fragments": 537, "total_fragments": 1131, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium azadirachtae", "strain": "strain=DSM 23848", "accession": "GCA_000956545.1", "taxid": 582680, "species_taxid": 582680, "relation_to_type": "type", "validated": true, "ani": 80.2271, "matched_fragments": 499, "total_fragments": 1131, "ani_threshold": 95, "status": 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