{ "type": "genome", "identifier": "GCF_018595675.2", "organism": "Flavihumibacter fluvii", "title": "Flavihumibacter fluvii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Inha University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018595675.2", "bioproject": "PRJNA224116", "biosample": "SAMN19291393", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2838157", "species_taxid": "2838157", "organism_name": "Flavihumibacter fluvii", "infraspecific_name": "strain=IMCC34837", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/23", "asm_name": "ASM1859567v2", "asm_submitter": "Inha University", "gbrs_paired_asm": "GCA_018595675.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/595/675/GCF_018595675.2_ASM1859567v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5001887", "genome_size_ungapped": "5001887", "gc_percent": "44.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018595675.2-RS_2024_07_01", "annotation_date": "2024-07-01", "total_gene_count": "4355", "protein_coding_gene_count": "4299", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-23", "dateModified": "2022-02-23", "datePublished": "2022-02-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavihumibacter fluvii" ], "sample_taxid": [ "2838157" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.415 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5001887", "Number of Sequences": "1", "Longest Sequences (bp)": "5001887", "N50 (bp)": "5001887", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.5", "Number of CDSs": "4280", "Average Protein Length": "356.6", "Coding Ratio (%)": "91.5", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavihumibacter fluminis", "strain": "strain=IMCC34837", "accession": "GCA_018595675.2", "taxid": 2838157, "species_taxid": 2838157, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1667, "total_fragments": 1667, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavihumibacter profundi", "strain": "strain=KCTC 62290", "accession": "GCA_020076305.1", "taxid": 2716883, "species_taxid": 2716883, "relation_to_type": "type", "validated": true, "ani": 79.4948, "matched_fragments": 711, "total_fragments": 1667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter stibioxidans", "strain": "strain=YS-17", "accession": "GCA_014332695.1", "taxid": 1834163, "species_taxid": 1834163, "relation_to_type": "type", "validated": true, "ani": 77.7514, "matched_fragments": 332, "total_fragments": 1667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter solisilvae", "strain": "strain=3-3", "accession": "GCA_000814475.1", "taxid": 1349421, "species_taxid": 1349421, "relation_to_type": "type", "validated": true, "ani": 77.4713, "matched_fragments": 254, "total_fragments": 1667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter rivuli", "strain": "strain=IMCC34838", "accession": "GCA_018595685.2", "taxid": 2838156, "species_taxid": 2838156, "relation_to_type": "type", "validated": true, "ani": 77.2663, "matched_fragments": 225, "total_fragments": 1667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter petaseus", "strain": "strain=NBRC 106054", "accession": "GCA_000974785.1", "taxid": 549295, "species_taxid": 549295, "relation_to_type": "type", "validated": true, "ani": 77.1526, "matched_fragments": 251, "total_fragments": 1667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavihumibacter cheonanensis", "strain": "strain=WS16", "accession": "GCA_022352215.1", "taxid": 1442385, "species_taxid": 1442385, "relation_to_type": "type", "validated": true, "ani": 77.071, "matched_fragments": 257, "total_fragments": 1667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminibacterium goheungense", "strain": "strain=DSM 28323", "accession": "GCA_004361915.1", "taxid": 1086393, "species_taxid": 1086393, "relation_to_type": "type", "validated": true, "ani": 76.2056, "matched_fragments": 72, "total_fragments": 1667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavisolibacter nicotianae", "strain": "strain=X7X", "accession": "GCA_003628535.1", "taxid": 2364882, "species_taxid": 2364882, "relation_to_type": "type", "validated": true, "ani": 76.19, "matched_fragments": 58, "total_fragments": 1667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacibacter cauensis", "strain": "strain=CGMCC 1.7271", "accession": "GCA_007830055.1", "taxid": 510947, "species_taxid": 510947, "relation_to_type": "type", "validated": true, "ani": 76.1077, "matched_fragments": 89, "total_fragments": 1667, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018595675.1", "gtdb_species": "s__Flavihumibacter sp018595675", "ani": 99.999, "matched_fragments": 1666, "total_fragments": 1667, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014332695.1", "gtdb_species": "s__Flavihumibacter stibioxidans", "ani": 77.7386, "matched_fragments": 332, "total_fragments": 1667, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000814475.1", "gtdb_species": "s__Flavihumibacter solisilvae", "ani": 77.4488, "matched_fragments": 254, "total_fragments": 1667, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000814325.1", "gtdb_species": "s__Flavihumibacter sp000814325", "ani": 77.4444, "matched_fragments": 246, "total_fragments": 1667, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001601815.1", "gtdb_species": "s__Flavihumibacter sp001601815", "ani": 77.4094, "matched_fragments": 221, "total_fragments": 1667, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002483205.1", "gtdb_species": "s__Flavihumibacter sp002483205", "ani": 77.1847, "matched_fragments": 225, "total_fragments": 1667, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000974785.1", "gtdb_species": "s__Flavihumibacter petaseus", "ani": 77.1475, "matched_fragments": 249, "total_fragments": 1667, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016787265.1", "gtdb_species": "s__Flavihumibacter sp016787265", "ani": 77.1039, "matched_fragments": 237, "total_fragments": 1667, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavihumibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003628535.1", "gtdb_species": "s__Flavisolibacter nicotianae", "ani": 76.1808, "matched_fragments": 57, "total_fragments": 1667, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014873345.1", "gtdb_species": "s__Flavitalea sp014873345", "ani": 76.1428, "matched_fragments": 59, "total_fragments": 1667, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007830055.1", "gtdb_species": "s__Lacibacter cauensis", "ani": 76.1008, "matched_fragments": 88, "total_fragments": 1667, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Lacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003963365.1", "gtdb_species": "s__AWTP1-9 sp003963365", "ani": 75.9891, "matched_fragments": 67, "total_fragments": 1667, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__AWTP1-9", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001302245.1", "gtdb_species": "s__PMP191F sp001302245", "ani": 75.9122, "matched_fragments": 112, "total_fragments": 1667, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__PMP191F", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.37", "min_intra_species_ani": "99.37", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002336115.1", "gtdb_species": "s__Lacibacter sp002336115", "ani": 75.6865, "matched_fragments": 54, "total_fragments": 1667, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Lacibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_014379345.1", "gtdb_species": "s__Flavitalea sp014379345", "ani": 75.346, "matched_fragments": 54, "total_fragments": 1667, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018267575.1", "gtdb_species": "s__Puia sp018267575", "ani": 75.2164, "matched_fragments": 65, "total_fragments": 1667, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Puia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.372, "cell_length": -0.28, "doubling_h": null, "growth_tmp": null, "optimum_tmp": 28.0, "optimum_ph": 6.5, "genome_size": 5552088.5, "gc_content": 49.27, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavihumibacter", "fluvii" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }