{ "type": "genome", "identifier": "GCF_018617875.1", "organism": "Exiguobacterium algae", "title": "Exiguobacterium algae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Oceanology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018617875.1", "bioproject": "PRJNA224116", "biosample": "SAMN15493207", "wgs_master": "JACSKZ000000000.1", "refseq_category": "reference genome", "taxid": "2751250", "species_taxid": "2751250", "organism_name": "Exiguobacterium algae", "infraspecific_name": "strain=S126", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/01", "asm_name": "ASM1861787v1", "asm_submitter": "Institute of Oceanology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_018617875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/617/875/GCF_018617875.1_ASM1861787v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2604965", "genome_size_ungapped": "2604865", "gc_percent": "48.500000", "replicon_count": "0", "scaffold_count": "16", "contig_count": "16", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018617875.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "2694", "protein_coding_gene_count": "2601", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-01", "dateModified": "2021-06-01", "datePublished": "2021-06-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Exiguobacterium algae" ], "sample_taxid": [ "2751250" ], "sample_host_organism": [ "marine algae" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Dongxing" ], "sample_host_location_id": [], "data_size": "0.741 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2604965", "Number of Sequences": "16", "Longest Sequences (bp)": "1039848", "N50 (bp)": "679613", "Gap Ratio (%)": "0.003839", "GCcontent (%)": "48.6", "Number of CDSs": "2634", "Average Protein Length": "298.5", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "67", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Exiguobacterium algae", "strain": "strain=S126", "accession": "GCA_018617875.1", "taxid": 2751250, "species_taxid": 2751250, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 860, "total_fragments": 862, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Exiguobacterium aestuarii", "strain": "strain=TF_16", "accession": "GCA_025234735.1", "taxid": 273527, "species_taxid": 273527, "relation_to_type": "type", "validated": true, "ani": 83.096, "matched_fragments": 553, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium marinum", "strain": "strain=DSM 16307", "accession": "GCA_000620845.1", "taxid": 273528, "species_taxid": 273528, "relation_to_type": "type", "validated": true, "ani": 82.9036, "matched_fragments": 590, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium profundum", "strain": "strain=10C", "accession": "GCA_025234635.1", "taxid": 307643, "species_taxid": 307643, "relation_to_type": "type", "validated": true, "ani": 82.8018, "matched_fragments": 555, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium qingdaonense", "strain": "strain=S82", "accession": "GCA_018617855.1", "taxid": 2751251, "species_taxid": 2751251, "relation_to_type": "type", "validated": true, "ani": 82.4768, "matched_fragments": 577, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium chiriqhucha", "strain": "strain=RW-2", "accession": "GCA_000416965.1", "taxid": 1385984, "species_taxid": 1385984, "relation_to_type": "type", "validated": true, "ani": 80.9649, "matched_fragments": 512, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium aurantiacum", "strain": "strain=DSM 6208", "accession": "GCA_000702585.1", "taxid": 33987, "species_taxid": 33987, "relation_to_type": "type", "validated": true, "ani": 80.9605, "matched_fragments": 501, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium aurantiacum", "strain": "strain=NCTC13163", "accession": "GCA_900450545.1", "taxid": 33987, "species_taxid": 33987, "relation_to_type": "type", "validated": true, "ani": 80.8588, "matched_fragments": 511, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium himgiriensis", "strain": "strain=K22_26", "accession": "GCA_025234715.1", "taxid": 384621, "species_taxid": 384621, "relation_to_type": "type", "validated": true, "ani": 80.8462, "matched_fragments": 441, "total_fragments": 862, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018617875.1", "gtdb_species": "s__Exiguobacterium sp018617875", "ani": 100.0, "matched_fragments": 860, "total_fragments": 862, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Exiguobacterium", "algae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }