{ "type": "genome", "identifier": "GCF_018642165.1", "organism": "Echinicola shivajiensis", "title": "Echinicola shivajiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong Univesity", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018642165.1", "bioproject": "PRJNA224116", "biosample": "SAMN19429923", "wgs_master": "JAHHZM000000000.1", "refseq_category": "reference genome", "taxid": "1035916", "species_taxid": "1035916", "organism_name": "Echinicola shivajiensis", "infraspecific_name": "strain=AK12", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/02", "asm_name": "ASM1864216v1", "asm_submitter": "Shandong Univesity", "gbrs_paired_asm": "GCA_018642165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/642/165/GCF_018642165.1_ASM1864216v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5636538", "genome_size_ungapped": "5636538", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018642165.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4490", "protein_coding_gene_count": "4423", "non_coding_gene_count": "54", "pubmed_id": "22105533" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-02", "dateModified": "2021-06-02", "datePublished": "2021-06-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Echinicola shivajiensis" ], "sample_taxid": [ "1035916" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India" ], "sample_host_location_id": [], "data_size": "1.590 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5636538", "Number of Sequences": "34", "Longest Sequences (bp)": "1166254", "N50 (bp)": "442767", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.0", "Number of CDSs": "4363", "Average Protein Length": "370.1", "Coding Ratio (%)": "86.0", "Number of rRNAs": "8", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Echinicola shivajiensis", "strain": "strain=AK12", "accession": "GCA_018642165.1", "taxid": 1035916, "species_taxid": 1035916, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1861, "total_fragments": 1863, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Echinicola salinicaeni", "strain": "strain=P51", "accession": "GCA_014280965.1", "taxid": 2762757, "species_taxid": 2762757, "relation_to_type": "type", "validated": true, "ani": 85.3834, "matched_fragments": 1369, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Echinicola marina", "strain": "strain=SCS 3-6", "accession": "GCA_020463795.1", "taxid": 2859768, "species_taxid": 2859768, "relation_to_type": "type", "validated": true, "ani": 85.0363, "matched_fragments": 1265, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Echinicola arenosa", "strain": "strain=CAU 1574", "accession": "GCA_014841125.1", "taxid": 2774144, "species_taxid": 2774144, "relation_to_type": "type", "validated": true, "ani": 80.1589, "matched_fragments": 681, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Echinicola 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25035", "accession": "GCA_900148515.1", "taxid": 1073327, "species_taxid": 1073327, "relation_to_type": "type", "validated": true, "ani": 76.9378, "matched_fragments": 110, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus iocasae", "strain": "strain=DSM 102044", "accession": "GCA_014206875.1", "taxid": 1836499, "species_taxid": 1836499, "relation_to_type": "type", "validated": true, "ani": 76.6311, "matched_fragments": 147, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cecembia calidifontis", "strain": "strain=DSM 21411", "accession": "GCA_004216715.1", "taxid": 1187080, "species_taxid": 1187080, "relation_to_type": "type", "validated": true, "ani": 76.6185, "matched_fragments": 116, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquiflexum lacus", "strain": "strain=CUG 91378", "accession": "GCA_015476655.1", "taxid": 2483805, 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Echinicola", "shivajiensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }