{ "type": "genome", "identifier": "GCF_018682675.1", "organism": "Sphingopyxis soli", "title": "Sphingopyxis soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018682675.1", "bioproject": "PRJNA224116", "biosample": "SAMN18202075", "wgs_master": "JAFMTR000000000.1", "refseq_category": "na", "taxid": "592051", "species_taxid": "592051", "organism_name": "Sphingopyxis soli", "infraspecific_name": "strain=BL03", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/02", "asm_name": "ASM1868267v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_018682675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/682/675/GCF_018682675.1_ASM1868267v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3633474", "genome_size_ungapped": "3633474", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "116", "contig_count": "116", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018682675.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "3555", "protein_coding_gene_count": "3464", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-02", "dateModified": "2021-06-02", "datePublished": "2021-06-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingopyxis soli" ], "sample_taxid": [ "592051" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Pohang" ], "sample_host_location_id": [], "data_size": "0.998 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3633474", "Number of Sequences": "116", "Longest Sequences (bp)": "188746", "N50 (bp)": "51841", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.8", "Number of CDSs": "3481", "Average Protein Length": "314.0", "Coding Ratio (%)": "90.3", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingopyxis soli", "strain": "strain=BL03", "accession": "GCA_018682675.1", "taxid": 592051, "species_taxid": 592051, "relation_to_type": "type", "validated": true, "ani": 99.9999, "matched_fragments": 1148, "total_fragments": 1156, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sphingopyxis lindanitolerans", "strain": "strain=WS5A3p", "accession": "GCA_002993885.1", "taxid": 2054227, "species_taxid": 2054227, "relation_to_type": "type", "validated": true, "ani": 85.6376, "matched_fragments": 809, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis italica", "strain": "strain=DSM 25229", "accession": "GCA_011926545.1", "taxid": 1129133, "species_taxid": 1129133, "relation_to_type": "type", "validated": true, "ani": 85.3738, "matched_fragments": 812, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis macrogoltabida", "strain": "strain=203", "accession": "GCA_001314325.1", "taxid": 33050, "species_taxid": 33050, "relation_to_type": "type", "validated": true, "ani": 85.0793, "matched_fragments": 847, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis terrae subsp. terrae", "strain": 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"GCA_001591045.1", "taxid": 267128, "species_taxid": 267128, "relation_to_type": "type", "validated": true, "ani": 84.4217, "matched_fragments": 684, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis indica", "strain": "strain=DS15", "accession": "GCA_900188185.1", "taxid": 436663, "species_taxid": 436663, "relation_to_type": "type", "validated": true, "ani": 84.4043, "matched_fragments": 756, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis terrae subsp. ummariensis", "strain": "strain=DSM 24316", "accession": "GCA_002374275.1", "taxid": 429001, "species_taxid": 33052, "relation_to_type": "type", "validated": true, "ani": 84.355, "matched_fragments": 746, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingopyxis terrae subsp. ummariensis", "strain": "strain=UI2", "accession": "GCA_900177755.1", "taxid": 429001, 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"type", "validated": true, "ani": 77.7781, "matched_fragments": 263, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas psychrotolerans", "strain": "strain=Cra20", "accession": "GCA_002796605.1", "taxid": 1327635, "species_taxid": 1327635, "relation_to_type": "type", "validated": true, "ani": 77.7366, "matched_fragments": 367, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania flava", "strain": "strain=DSM 16421", "accession": "GCA_011762005.1", "taxid": 192812, "species_taxid": 192812, "relation_to_type": "type", "validated": true, "ani": 77.7067, "matched_fragments": 253, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gelatinilytica", "strain": "strain=1NDH1", "accession": "GCA_019711315.1", "taxid": 2867231, "species_taxid": 2867231, "relation_to_type": "type", "validated": true, "ani": 77.6751, 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