{ "type": "genome", "identifier": "GCF_018687595.1", "organism": "Polynucleobacter paludilacus", "title": "Polynucleobacter paludilacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Innsbruck", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018687595.1", "bioproject": "PRJNA224116", "biosample": "SAMN04076521", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1855895", "species_taxid": "1855895", "organism_name": "Polynucleobacter paludilacus", "infraspecific_name": "strain=MWH-Mekk-C3", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/03", "asm_name": "ASM1868759v1", "asm_submitter": "University of Innsbruck", "gbrs_paired_asm": "GCA_018687595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/687/595/GCF_018687595.1_ASM1868759v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1670875", "genome_size_ungapped": "1670875", "gc_percent": "46.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018687595.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "1762", "protein_coding_gene_count": "1702", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-03", "dateModified": "2021-06-03", "datePublished": "2021-06-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Polynucleobacter paludilacus" ], "sample_taxid": [ "1855895" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Finland: Lake Mekkojarvi" ], "sample_host_location_id": [], "data_size": "0.477 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1670875", "Number of Sequences": "1", "Longest Sequences (bp)": "1670875", "N50 (bp)": "1670875", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.5", "Number of CDSs": "1695", "Average Protein Length": "306.1", "Coding Ratio (%)": "93.2", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polynucleobacter paludilacus", "strain": "strain=MWH-Mekk-C3", "accession": "GCA_018687595.1", "taxid": 1855895, "species_taxid": 1855895, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 556, "total_fragments": 556, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Polynucleobacter paneuropaeus", "strain": "strain=MG-25-Pas1-D2", "accession": "GCA_003261235.1", "taxid": 2527775, "species_taxid": 2527775, "relation_to_type": "type", "validated": true, "ani": 86.2084, "matched_fragments": 472, "total_fragments": 556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter campilacus", "strain": "strain=MWH-Feld-100", "accession": "GCA_002206625.1", "taxid": 1743163, "species_taxid": 1743163, "relation_to_type": "type", "validated": true, "ani": 79.7026, "matched_fragments": 211, "total_fragments": 556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter aenigmaticus", "strain": "strain=MWH-K35W1", "accession": "GCA_002206635.1", "taxid": 1743164, "species_taxid": 1743164, "relation_to_type": "type", "validated": true, "ani": 79.693, "matched_fragments": 203, "total_fragments": 556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter parvulilacunae", "strain": "strain=Ross1-W9", "accession": "GCA_018881715.1", "taxid": 1855631, "species_taxid": 1855631, "relation_to_type": "type", "validated": true, "ani": 79.6875, "matched_fragments": 220, "total_fragments": 556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter finlandensis", "strain": "strain=MWH-Mekk-B1", "accession": "GCA_018881755.1", "taxid": 1855894, "species_taxid": 1855894, "relation_to_type": "type", "validated": true, "ani": 79.5968, "matched_fragments": 238, "total_fragments": 556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter yangtzensis", "strain": "strain=MWH-JaK3", "accession": "GCA_001595965.1", "taxid": 1743159, "species_taxid": 1743159, "relation_to_type": "type", "validated": true, "ani": 79.5257, "matched_fragments": 209, "total_fragments": 556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter hirudinilacicola", "strain": "strain=MWH-EgelM1-30-B4", "accession": "GCA_002192535.1", "taxid": 1743166, "species_taxid": 1743166, "relation_to_type": "type", "validated": true, "ani": 79.5209, "matched_fragments": 230, "total_fragments": 556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter arcticus", "strain": "strain=UK-Long2-W17", "accession": "GCA_013307205.1", "taxid": 1743165, "species_taxid": 1743165, "relation_to_type": "type", "validated": true, "ani": 79.5118, "matched_fragments": 200, "total_fragments": 556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter wuianus", "strain": "strain=QLW-P1FAT50C-4", "accession": "GCA_001659725.1", "taxid": 1743168, "species_taxid": 1743168, "relation_to_type": "type", "validated": true, "ani": 79.4522, "matched_fragments": 226, "total_fragments": 556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter bastaniensis", "strain": "strain=AP-Basta-1000A-D1", "accession": "GCA_018882205.1", "taxid": 2081039, "species_taxid": 2081039, "relation_to_type": "type", "validated": true, "ani": 79.2216, "matched_fragments": 220, "total_fragments": 556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter nymphae", "strain": "strain=AP-Mumm-500A-B3", "accession": "GCA_018882155.1", "taxid": 2081043, "species_taxid": 2081043, "relation_to_type": "type", "validated": true, "ani": 79.1378, "matched_fragments": 232, "total_fragments": 556, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018687595.1", "gtdb_species": "s__Polynucleobacter asymbioticus_B", "ani": 100.0, "matched_fragments": 556, "total_fragments": 556, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_018687555.1", "gtdb_species": "s__Polynucleobacter sp018687555", "ani": 94.3027, "matched_fragments": 488, "total_fragments": 556, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003261235.1", "gtdb_species": "s__Polynucleobacter paneuropaeus", "ani": 86.2193, "matched_fragments": 471, "total_fragments": 556, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "98.42", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 33, "status": "-" }, { "accession": "GCF_018687455.1", "gtdb_species": "s__Polynucleobacter sp001870365", "ani": 79.7298, "matched_fragments": 221, "total_fragments": 556, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.21", "min_intra_species_ani": "96.15", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_018687355.1", "gtdb_species": "s__Polynucleobacter sp018687355", "ani": 79.7019, "matched_fragments": 214, "total_fragments": 556, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018687935.1", "gtdb_species": "s__Polynucleobacter sp018687935", "ani": 79.6643, "matched_fragments": 228, "total_fragments": 556, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.41", "min_intra_species_ani": "97.35", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_018687815.1", "gtdb_species": "s__Polynucleobacter sp018687815", "ani": 79.664, "matched_fragments": 218, "total_fragments": 556, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018881595.1", "gtdb_species": "s__Polynucleobacter sp018881595", "ani": 79.6291, "matched_fragments": 211, "total_fragments": 556, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018687975.1", "gtdb_species": "s__Polynucleobacter sp018687975", "ani": 79.5925, "matched_fragments": 208, "total_fragments": 556, "gtdb_taxonomy": 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