{ "type": "genome", "identifier": "GCF_018728565.1", "organism": "Zobellia russellii", "title": "Zobellia russellii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Pacific Institute of Bioorganic Chemistry", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018728565.1", "bioproject": "PRJNA224116", "biosample": "SAMN15916141", "wgs_master": "JACSOI000000000.1", "refseq_category": "na", "taxid": "248907", "species_taxid": "248907", "organism_name": "Zobellia russellii", "infraspecific_name": "strain=KMM 3677", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/04", "asm_name": "ASM1872856v1", "asm_submitter": "Pacific Institute of Bioorganic Chemistry", "gbrs_paired_asm": "GCA_018728565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/728/565/GCF_018728565.1_ASM1872856v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4923091", "genome_size_ungapped": "4923091", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "49", "contig_count": "49", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018728565.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4038", "protein_coding_gene_count": "3979", "non_coding_gene_count": "44", "pubmed_id": "33924031" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-04", "dateModified": "2021-06-04", "datePublished": "2021-06-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Zobellia russellii" ], "sample_taxid": [ "248907" ], "sample_host_organism": [ "Acrosiphonia sonderi" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia:Vladivostok, Troitsa Bay" ], "sample_host_location_id": [], "data_size": "1.395 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4923091", "Number of Sequences": "49", "Longest Sequences (bp)": "1350759", "N50 (bp)": "644008", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.0", "Number of CDSs": "3922", "Average Protein Length": "373.9", "Coding Ratio (%)": "89.4", "Number of rRNAs": "2", "Number of tRNAs": "37", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Zobellia russellii", "strain": "strain=KMM 3677", "accession": "GCA_018728565.1", "taxid": 248907, "species_taxid": 248907, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1625, "total_fragments": 1625, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Zobellia amurskyensis", "strain": "strain=KMM 3526", "accession": "GCA_009725985.1", "taxid": 248905, "species_taxid": 248905, "relation_to_type": "type", "validated": true, "ani": 85.133, "matched_fragments": 1220, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia roscoffensis", "strain": "strain=Asnod1-F08", "accession": "GCA_015330165.1", "taxid": 2779508, "species_taxid": 2779508, "relation_to_type": "type", "validated": true, "ani": 82.0962, "matched_fragments": 1077, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia laminariae", "strain": "strain=KMM 3676", "accession": "GCA_009725995.1", "taxid": 248906, "species_taxid": 248906, "relation_to_type": "type", "validated": true, "ani": 81.7923, "matched_fragments": 1003, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia barbeyronii", "strain": "strain=KMM 6746", "accession": "GCA_018603515.1", "taxid": 2748009, "species_taxid": 2748009, "relation_to_type": "type", "validated": true, "ani": 81.3994, "matched_fragments": 973, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia uliginosa", "strain": "strain=DSM 2061", "accession": "GCA_900156625.1", "taxid": 143224, "species_taxid": 143224, "relation_to_type": "type", "validated": true, "ani": 81.3568, "matched_fragments": 831, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia nedashkovskayae", "strain": "strain=Asnod2-B07-B", "accession": "GCA_015330125.1", "taxid": 2779510, "species_taxid": 2779510, "relation_to_type": "type", "validated": true, "ani": 81.1959, "matched_fragments": 963, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia galactanivorans", "strain": "strain=DsiJT", "accession": "GCA_000973105.1", "taxid": 63186, "species_taxid": 63186, "relation_to_type": "type", "validated": true, "ani": 80.664, "matched_fragments": 848, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda hymeniacidonis", "strain": "strain=176CP4-71", "accession": "GCA_004296335.1", "taxid": 2517819, "species_taxid": 2517819, "relation_to_type": "type", "validated": true, "ani": 76.4964, "matched_fragments": 85, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera flava", "strain": "strain=NBU2984", "accession": "GCA_023634025.1", "taxid": 2930218, "species_taxid": 2930218, "relation_to_type": "type", "validated": true, "ani": 76.4491, "matched_fragments": 67, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 76.4385, "matched_fragments": 56, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceivirga lutea", "strain": "strain=CSW06", "accession": "GCA_014235875.1", "taxid": 1775167, "species_taxid": 1775167, "relation_to_type": "type", "validated": true, "ani": 76.3492, "matched_fragments": 110, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceivirga lutea", "strain": "strain=CGMCC 1.15761", "accession": "GCA_014643615.1", "taxid": 1775167, "species_taxid": 1775167, "relation_to_type": "type", "validated": true, "ani": 76.3166, "matched_fragments": 110, "total_fragments": 1625, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { 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