{ "type": "genome", "identifier": "GCF_018729305.1", "organism": "Phycicoccus mangrovi", "title": "Phycicoccus mangrovi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Life sciences Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_018729305.1", "bioproject": "PRJNA224116", "biosample": "SAMN19461138", "wgs_master": "JAHHWP000000000.1", "refseq_category": "reference genome", "taxid": "2840470", "species_taxid": "2840470", "organism_name": "Phycicoccus mangrovi", "infraspecific_name": "strain=KQZ13P-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/06/06", "asm_name": "ASM1872930v1", "asm_submitter": "Life sciences Institute", "gbrs_paired_asm": "GCA_018729305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/018/729/305/GCF_018729305.1_ASM1872930v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4473435", "genome_size_ungapped": "4473435", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_018729305.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "4286", "protein_coding_gene_count": "4202", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-06-06", "dateModified": "2021-06-06", "datePublished": "2021-06-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Phycicoccus mangrovi" ], "sample_taxid": [ "2840470" ], "sample_host_organism": [ "plant" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guangxi" 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"GCA_003002895.1", "taxid": 407159, "species_taxid": 407159, "relation_to_type": "type", "validated": true, "ani": 80.9563, "matched_fragments": 671, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter endophyticus", "strain": "strain=YIM B02568", "accession": "GCA_016888335.1", "taxid": 2806261, "species_taxid": 2806261, "relation_to_type": "type", "validated": true, "ani": 80.2773, "matched_fragments": 548, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter melonis", "strain": "strain=NBRC107855", "accession": "GCA_020567375.1", "taxid": 262209, "species_taxid": 262209, "relation_to_type": "type", "validated": true, "ani": 80.1011, "matched_fragments": 641, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus cauae", "strain": "strain=MKL-02", "accession": "GCA_009707125.1", "taxid": 2663847, "species_taxid": 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